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Here we address the topic of lithospheric structure by a combined geochemical and magnetotelluric analysis, which has been carried out in the framework of the Pannon LitH2Oscope project. The main objective was to detect the resistivity distribution over the entire lithosphere by magnetotelluric measurements, considering the lithological resistivity properties and relate the results to the structure and evolution of the Pannonian Basin. The Pannon LitH 2 Oscope MT array was used to estimate the depth of the Lithosphere-Asthenosphere Boundary (LAB), considering the legacy MT data and compared to previous estimates for the region. Using the MT and geomagnetic response functions, major structural zones of the Pannonian basin, such as the Mid-Hungarian Shear Zone or fault systems like the Makó Trough and the Békés Basin, were also imaged. In addition, we used the apparent resistivity soundings to compare 1D resistivity models computed from geochemistry and obtained from field MT measurements. This comparison provided new constrains for the composition, fluid and melt content variations at the local lithosphere-asthenosphere boundary. 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