@article{MTMT:2184992, title = {"Pull Moves" for Rectangular Lattice Polymer Models Are Not Fully Reversible}, url = {https://m2.mtmt.hu/api/publication/2184992}, author = {Györffy, Dániel and Závodszky, Péter and Szilágyi, András}, doi = {10.1109/TCBB.2012.129}, journal-iso = {IEEE ACM T COMPUT BI}, journal = {IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS}, volume = {9}, unique-id = {2184992}, issn = {1545-5963}, abstract = {"Pull moves" is a popular move set for lattice polymer model simulations. We show that the proof given for its reversibility earlier is flawed, and some moves are irreversible, which leads to biases in the parameters estimated from the simulations. We show how to make the move set fully reversible.}, keywords = {PROTEIN; SIMULATIONS; ALGORITHM; EFFICIENT; LATTICE MODEL; DENSITY-OF-STATES; SELF-AVOIDING WALK; HP model; Pull moves}, year = {2012}, eissn = {1557-9964}, pages = {1847-1849}, orcid-numbers = {Szilágyi, András/0000-0002-1773-6861} } @article{MTMT:1011202, title = {Preformed structural elements feature in partner recognition by intrinsically unstructured proteins}, url = {https://m2.mtmt.hu/api/publication/1011202}, author = {Fuxreiter, Mónika and Simon, István and Friedrich, Péter and Tompa, Péter}, doi = {10.1016/j.jmb.2004.03.017}, journal-iso = {J MOL BIOL}, journal = {JOURNAL OF MOLECULAR BIOLOGY}, volume = {338}, unique-id = {1011202}, issn = {0022-2836}, year = {2004}, eissn = {1089-8638}, pages = {1015-1026} }