TY - JOUR AU - Shokri-Gharelo, R. AU - Derakhti-Dizaji, M. AU - Dadashi, D. AU - Chalekaei, M. AU - Rostami-Tobnag, G. TI - Bioinformatics and meta-analysis of expression data to investigate transcriptomic response of wheat root to abiotic stresses JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 237 PY - 2024 SN - 0303-2647 DO - 10.1016/j.biosystems.2024.105165 UR - https://m2.mtmt.hu/api/publication/34834419 ID - 34834419 N1 - Department of Plant Breeding and Biotechnology, College of Agriculture, University of Tabriz, Tabriz, Iran Researcher of Sugar Beet Seed Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran Department of Agronomy and Plant Breeding, Agricultural College, University of Tehran, Iran Department of Horticulture, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran Cited By :1 Export Date: 3 May 2024 CODEN: BSYMB Correspondence Address: Rostami-Tobnag, G.; Department of Horticulture, Iran; email: gh.rostamitobnag@mail.um.ac.ir Correspondence Address: Shokri-Gharelo, R.; Department of Plant Breeding and Biotechnology, Iran; email: Shokri.gharelo@gmail.com Chemicals/CAS: cyclin dependent kinase, 150428-23-2; oxygen, 7782-44-7; protein histidine kinase, 99283-67-7; protein serine threonine kinase Funding text 1: Not applicable. AB - Abiotic stresses are predominant and main causes of the losses in the crop yield. A complexity of systems biology and involvement of numerous genes in the response to abiotic factors have challenged efforts to create tolerant cultivars with sustainable production. The root is the main organ of the plant and determines a plant tolerance under stressful conditions. In this study, we carried out a meta-analysis of expression datasets from wheat root to identify differentially expressed genes, followed by the weighted gene co-expression network analysis (WGCNA) to construct the weighted gene co-expression network. The aim was to identify consensus differentially expressed genes with regulatory functions, gene networks, and biological pathways involved in response of wheat root to a set of abiotic stresses. The meta-analysis using Fisher method (FDR<0.05) identified consensus 526 DEGs from 55,367 probe sets. Although the annotated expression data are limited for wheat, the functional analysis based on the data from model plants could identify the up-regulated seven regulatory genes involved in chromosome organization and response to oxygen-containing compounds. WGCNA identified four gene modules that were mostly associated with the ribosome biogenesis and polypeptide synthesis. This study's findings enhance our understanding of key players and gene networks related to wheat root response to multiple abiotic stresses. © 2024 Elsevier B.V. LA - English DB - MTMT ER - TY - JOUR AU - Mougkogiannis, Panagiotis AU - Adamatzky, Andrew TI - On interaction of proteinoids with simulated neural networks JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 237 PY - 2024 PG - 18 SN - 0303-2647 DO - 10.1016/j.biosystems.2024.105175 UR - https://m2.mtmt.hu/api/publication/34819472 ID - 34819472 LA - English DB - MTMT ER - TY - JOUR AU - Furtado, A.N.M. AU - de, Farias S.T. AU - Maia, M.D.S. TI - Structural analyzes suggest that MiSSP13 and MiSSP16.5 may act as proteases inhibitors during ectomycorrhiza establishment in Laccaria bicolor JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 238 PY - 2024 SN - 0303-2647 DO - 10.1016/j.biosystems.2024.105194 UR - https://m2.mtmt.hu/api/publication/34781857 ID - 34781857 N1 - Departamento de Biologia Molecular, Universidade Federal da Paraíba, Paraíba, João Pessoa, 58051-900, Brazil Network of Researchers on Chemical Emergence of Life (NoRCEL), Leeds, LS7 3RB, United Kingdom Export Date: 10 April 2024 CODEN: BSYMB Correspondence Address: Furtado, A.N.M.; Departamento de Biologia Molecular, Paraíba, Brazil; email: ariadnemf@gmail.com LA - English DB - MTMT ER - TY - JOUR AU - Girard, C. TI - The tri-flow adaptiveness of codes in major evolutionary transitions JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 237 PY - 2024 SN - 0303-2647 DO - 10.1016/j.biosystems.2024.105133 UR - https://m2.mtmt.hu/api/publication/34773481 ID - 34773481 N1 - Export Date: 5 April 2024 CODEN: BSYMB LA - English DB - MTMT ER - TY - JOUR AU - Garte, S. TI - Accurate phenotypic self-replication as a necessary cause for biological evolution. JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 237 PY - 2024 SN - 0303-2647 DO - 10.1016/j.biosystems.2024.105154 UR - https://m2.mtmt.hu/api/publication/34773318 ID - 34773318 N1 - Export Date: 5 April 2024 CODEN: BSYMB LA - English DB - MTMT ER - TY - JOUR AU - Jaćimović, Vladimir TI - Natural gradient ascent in evolutionary games JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 236 PY - 2024 PG - 6 SN - 0303-2647 DO - 10.1016/j.biosystems.2024.105127 UR - https://m2.mtmt.hu/api/publication/34761456 ID - 34761456 LA - English DB - MTMT ER - TY - JOUR AU - Torres-Martínez, Sergio TI - Embodied essentialism in the reconstruction of the animal sign in robot animal design JF - BIOSYSTEMS J2 - BIOSYSTEMS PY - 2024 SP - 105178 SN - 0303-2647 DO - 10.1016/j.biosystems.2024.105178 UR - https://m2.mtmt.hu/api/publication/34736868 ID - 34736868 LA - English DB - MTMT ER - TY - JOUR AU - Zhdanov, Vladimir P. TI - Kinetics of cancer metastasis JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 235 PY - 2024 PG - 7 SN - 0303-2647 DO - 10.1016/j.biosystems.2023.105098 UR - https://m2.mtmt.hu/api/publication/34674292 ID - 34674292 LA - English DB - MTMT ER - TY - JOUR AU - Jurenaite, Neringa AU - Leon-Perinan, Daniel AU - Donath, Veronika AU - Torge, Sunna AU - Jakel, Rene TI - SetQuence & SetOmic: Deep set transformers for whole genome and exome tumour analysis JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 235 PY - 2024 PG - 17 SN - 0303-2647 DO - 10.1016/j.biosystems.2023.105095 UR - https://m2.mtmt.hu/api/publication/34652368 ID - 34652368 LA - English DB - MTMT ER - TY - JOUR AU - Hosoda, Kazufumi AU - Seno, Shigeto AU - Murakami, Naomi AU - Matsuda, Hideo AU - Osada, Yutaka AU - Kamiura, Rikuto AU - Kondoh, Michio TI - Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach JF - BIOSYSTEMS J2 - BIOSYSTEMS VL - 235 PY - 2024 PG - 12 SN - 0303-2647 DO - 10.1016/j.biosystems.2023.105087 UR - https://m2.mtmt.hu/api/publication/34625702 ID - 34625702 LA - English DB - MTMT ER -