@article{MTMT:34819472,
	title = {On interaction of proteinoids with simulated neural networks},
	url = {https://m2.mtmt.hu/api/publication/34819472},
	author = {Mougkogiannis, Panagiotis and Adamatzky, Andrew},
	doi = {10.1016/j.biosystems.2024.105175},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {237},
	unique-id = {34819472},
	issn = {0303-2647},
	year = {2024},
	eissn = {1872-8324},
	orcid-numbers = {Mougkogiannis, Panagiotis/0000-0003-1710-4917}
}

@article{MTMT:34781857,
	title = {Structural analyzes suggest that MiSSP13 and MiSSP16.5 may act as proteases inhibitors during ectomycorrhiza establishment in Laccaria bicolor},
	url = {https://m2.mtmt.hu/api/publication/34781857},
	author = {Furtado, A.N.M. and de, Farias S.T. and Maia, M.D.S.},
	doi = {10.1016/j.biosystems.2024.105194},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {238},
	unique-id = {34781857},
	issn = {0303-2647},
	year = {2024},
	eissn = {1872-8324}
}

@article{MTMT:34773481,
	title = {The tri-flow adaptiveness of codes in major evolutionary transitions},
	url = {https://m2.mtmt.hu/api/publication/34773481},
	author = {Girard, C.},
	doi = {10.1016/j.biosystems.2024.105133},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {237},
	unique-id = {34773481},
	issn = {0303-2647},
	year = {2024},
	eissn = {1872-8324}
}

@article{MTMT:34773318,
	title = {Accurate phenotypic self-replication as a necessary cause for biological evolution.},
	url = {https://m2.mtmt.hu/api/publication/34773318},
	author = {Garte, S.},
	doi = {10.1016/j.biosystems.2024.105154},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {237},
	unique-id = {34773318},
	issn = {0303-2647},
	year = {2024},
	eissn = {1872-8324}
}

@article{MTMT:34761456,
	title = {Natural gradient ascent in evolutionary games},
	url = {https://m2.mtmt.hu/api/publication/34761456},
	author = {Jaćimović, Vladimir},
	doi = {10.1016/j.biosystems.2024.105127},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {236},
	unique-id = {34761456},
	issn = {0303-2647},
	year = {2024},
	eissn = {1872-8324}
}

@article{MTMT:34736868,
	title = {Embodied essentialism in the reconstruction of the animal sign in robot animal design},
	url = {https://m2.mtmt.hu/api/publication/34736868},
	author = {Torres-Martínez, Sergio},
	doi = {10.1016/j.biosystems.2024.105178},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	unique-id = {34736868},
	issn = {0303-2647},
	year = {2024},
	eissn = {1872-8324},
	pages = {105178},
	orcid-numbers = {Torres-Martínez, Sergio/0000-0002-8823-1676}
}

@article{MTMT:34674292,
	title = {Kinetics of cancer metastasis},
	url = {https://m2.mtmt.hu/api/publication/34674292},
	author = {Zhdanov, Vladimir P.},
	doi = {10.1016/j.biosystems.2023.105098},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {235},
	unique-id = {34674292},
	issn = {0303-2647},
	keywords = {CANCER; Metastases; kinetic model; TUMOR-DERIVED EXOSOMES; Niches; Metastatic stem cells},
	year = {2024},
	eissn = {1872-8324}
}

@article{MTMT:34652368,
	title = {SetQuence & SetOmic: Deep set transformers for whole genome and exome tumour analysis},
	url = {https://m2.mtmt.hu/api/publication/34652368},
	author = {Jurenaite, Neringa and Leon-Perinan, Daniel and Donath, Veronika and Torge, Sunna and Jakel, Rene},
	doi = {10.1016/j.biosystems.2023.105095},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {235},
	unique-id = {34652368},
	issn = {0303-2647},
	keywords = {deep neural network; Language model; multi-omics; Set representations; Whole-genome motifs},
	year = {2024},
	eissn = {1872-8324}
}

@article{MTMT:34625702,
	title = {Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach},
	url = {https://m2.mtmt.hu/api/publication/34625702},
	author = {Hosoda, Kazufumi and Seno, Shigeto and Murakami, Naomi and Matsuda, Hideo and Osada, Yutaka and Kamiura, Rikuto and Kondoh, Michio},
	doi = {10.1016/j.biosystems.2023.105087},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {235},
	unique-id = {34625702},
	issn = {0303-2647},
	keywords = {machine learning; synthetic ecosystem; Experimental model ecosystem; Microbial microcosm},
	year = {2024},
	eissn = {1872-8324},
	orcid-numbers = {Hosoda, Kazufumi/0000-0002-8043-0216}
}

@article{MTMT:34618049,
	title = {Biological thermodynamics: Ervin Bauer and the unification of life sciences and physics},
	url = {https://m2.mtmt.hu/api/publication/34618049},
	author = {Igamberdiev, Abir U.},
	doi = {10.1016/j.biosystems.2023.105089},
	journal-iso = {BIOSYSTEMS},
	journal = {BIOSYSTEMS},
	volume = {235},
	unique-id = {34618049},
	issn = {0303-2647},
	abstract = {Biological systems operate toward the maximization of their self-maintenance and adaptability. This is achieved through the establishment of robust self-maintaining configurations acting as attractors resistant to external and internal perturbations. Ervin Bauer (1890-1938) was the first who formulated this essential thermodynamic constraint in the operation of biological systems, which he defined as the stable non-equilibrium state. The latter appears as the basic attractor relative to which biological organization is established. The stable non-equilibrium state represents a generalized cell energy status corresponding to efficient spatiotemporal organization of the fluxes of matter and energy and constantly reproducing the conditions of self-maintenance of metabolism and controlling the rates of major metabolic fluxes that follow thermodynamically and kinetically defined computational principles. This state is realized in the autopoietic structures having closed loops of causation based on the operation of biological codes. The principle of thermodynamic buffering determines the conditions for optimization of the fluxes of load and consumption in metabolism establishing the conditions of metabolic stable non-equilibrium. In developing and evolving biological systems, the principle of stable non-equilibrium is transformed into the principle of increasing external work, which is grounded in the hyper-restorative nonequilibrium dynamics. Bauer's concept of the stable non-equilibrium state puts thermodynamics into the frames of the internal biological causality governing self-maintenance and development of living systems. It can be defined as a relational theory of biological thermodynamics since the standard to which it refers represents the actual biological function rather than the abstract state of thermodynamic equilibrium.},
	keywords = {stable non-equilibrium; Ervin Bauer; Biological thermodynamics; thermodynamic buffering; Hyper-restoration; Relational biology},
	year = {2024},
	eissn = {1872-8324}
}