TY  - JOUR
AU  - Fujibayashi, M.
AU  - Abe, K.
TI  - A behavioral analysis system MCFBM enables objective inference of songbirds’ attention during social interactions
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 9
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100844
UR  - https://m2.mtmt.hu/api/publication/35622954
ID  - 35622954
N1  - Export Date: 5 December 2024            
            Correspondence Address: Abe, K.; Lab of Brain Development, Katahira 2-1-1, Aoba-ku, Miyagi, Japan; email: k.abe@tohoku.ac.jp
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Chi, Y.
AU  - Lu, X.
AU  - Li, S.
AU  - Wang, J.
AU  - Xi, J.
AU  - Zhou, X.
AU  - Tang, C.
AU  - Chen, M.
AU  - Yuan, H.
AU  - Lin, S.
AU  - Xiao, Y.
AU  - Lai, L.
AU  - Zou, Q.
TI  - A compact, versatile drug-induced splicing switch system with minimal background expression
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 9
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100842
UR  - https://m2.mtmt.hu/api/publication/35611056
ID  - 35611056
N1  - Guangdong Provincial Key Laboratory of Large Animal Models for Biomedicine, South China Institute of Large Animal Models for Biomedicine, School of Pharmacy and Food Engineering, Wuyi University, Jiangmen, 529020, China            
            Jiangmen Wuyi Traditional Chinese Medicine Hospital, Jiangmen, 529000, China            
            CAS Key Laboratory of Regenerative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, 510530, China            
            Export Date: 29 November 2024            
            Correspondence Address: Lai, L.; Guangdong Provincial Key Laboratory of Large Animal Models for Biomedicine, China; email: lai_liangxue@gibh.ac.cn            
            Correspondence Address: Zou, Q.; Guangdong Provincial Key Laboratory of Large Animal Models for Biomedicine, China; email: zouqj@wyu.edu.cn
AB  - Gene-switch techniques hold promising applications in contemporary genetics research, particularly in disease treatment and genetic engineering. Here, we developed a compact drug-induced splicing system that maintains low background using a human ubiquitin C (hUBC) promoter and optimized drug (LMI070) binding sequences based on the Xon switch system. To ensure precise subcellular localization of the protein of interest (POI), we inserted a 2A self-cleaving peptide between the extra N-terminal peptide and POI. This streamlined and optimized switch system, named miniXon2G, effectively regulated POIs in different subcellular localizations both in vitro and in vivo. Furthermore, miniXon2G could be integrated into endogenous gene loci, resulting in precise, reversible regulation of target genes by both endogenous regulators and drugs. Overall, these findings highlight the performance of miniXon2G in controlling protein expression with great potential for general applicability to diverse biological scenarios requiring precise and delicate regulation. © 2024 The Authors
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Wu, Zhenqin
AU  - Kondo, Ayano
AU  - McGrady, Monee
AU  - Baker, Ethan A. G.
AU  - Chidester, Benjamin
AU  - Wu, Eric
AU  - Rahim, Maha K.
AU  - Bracey, Nathan A.
AU  - Charu, Vivek
AU  - Cho, Raymond J.
AU  - Cheng, Jeffrey B.
AU  - Afkarian, Maryam
AU  - Zou, James
AU  - Mayer, Aaron T.
AU  - Trevino, Alexandro E.
TI  - Discovery and generalization of tissue structures from spatial omics data
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 8
PG  - 23
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100838
UR  - https://m2.mtmt.hu/api/publication/35332823
ID  - 35332823
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Dyer, Brannen
AU  - Yu, Sue O.
AU  - Brown, R. Lane
AU  - Lang, Richard A.
AU  - D'Souza, Shane P.
TI  - Defining spatial nonuniformities of all ipRGC types using an improved Opn4cre recombinase mouse line
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 8
PG  - 22
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100837
UR  - https://m2.mtmt.hu/api/publication/35289020
ID  - 35289020
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Odriozola, Inaki
AU  - Rasmussen, Jacob A.
AU  - Gilbert, M. Thomas P.
AU  - Limborg, Morten T.
AU  - Alberdi, Antton
TI  - A practical introduction to holo-omics
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 7
PG  - 12
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100820
UR  - https://m2.mtmt.hu/api/publication/35381110
ID  - 35381110
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Shoyer, T. Curtis
AU  - Collins, Kasie L.
AU  - Ham, Trevor R.
AU  - Blanchard, Aaron T.
AU  - Malavade, Juilee N.
AU  - Johns, Benjamin A.
AU  - West, Jennifer L.
AU  - Hoffman, Brenton D.
TI  - Detection of fluorescent protein mechanical switching in cellulo
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 7
PG  - 25
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100815
UR  - https://m2.mtmt.hu/api/publication/35293045
ID  - 35293045
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Bartelt, Luke C.
AU  - Fakhri, Mouad
AU  - Adamek, Grazyna
AU  - Trybus, Magdalena
AU  - Samelak-Czajka, Anna
AU  - Jackowiak, Paulina
AU  - Fiszer, Agnieszka
AU  - Lowe, Craig B.
AU  - Spada, Albert R. La
AU  - Switonski, Pawel M.
TI  - Antibody-assisted selective isolation of Purkinje cell nuclei from mouse cerebellar tissue
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 7
PG  - 15
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100816
UR  - https://m2.mtmt.hu/api/publication/35279761
ID  - 35279761
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Xie, Jiajing
AU  - Chen, Ying
AU  - Luo, Shijie
AU  - Yang, Wenxian
AU  - Lin, Yuxiang
AU  - Wang, Liansheng
AU  - Ding, Xin
AU  - Tong, Mengsha
AU  - Yu, Rongshan
TI  - Tracing unknown tumor origins with a biological-pathway-based transformer model
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 6
PG  - 18
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100797
UR  - https://m2.mtmt.hu/api/publication/35350884
ID  - 35350884
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Kowalczewski, Andrew
AU  - Sun, Shiyang
AU  - Mai, Nhu Y.
AU  - Song, Yuanhui
AU  - Hoang, Plansky
AU  - Liu, Xiyuan
AU  - Yang, Huaxiao
AU  - Ma, Zhen
TI  - Design optimization of geometrically confined cardiac organoids enabled by machine learning techniques
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 6
PG  - 19
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100798
UR  - https://m2.mtmt.hu/api/publication/35324298
ID  - 35324298
LA  - English
DB  - MTMT
ER  - 

TY  - JOUR
AU  - Nouri, Nima
AU  - Gaglia, Giorgio
AU  - Mattoo, Hamid
AU  - de Rinaldis, Emanuele
AU  - Savova, Virginia
TI  - GENIX enables comparative network analysis of single-cell RNA sequencing to reveal signatures of therapeutic interventions
JF  - CELL REPORTS METHODS
J2  - CELL REP METH
VL  - 4
PY  - 2024
IS  - 6
PG  - 20
SN  - 2667-2375
DO  - 10.1016/j.crmeth.2024.100794
UR  - https://m2.mtmt.hu/api/publication/35313362
ID  - 35313362
LA  - English
DB  - MTMT
ER  -