TY - JOUR AU - Taneva, Stefka G. AU - Krumova, Sashka AU - Bogár, Ferenc AU - Kincses, András AU - Stoichev, Svetozar AU - Todinova, Svetla AU - Danailova, Avgustina AU - Horváth, János AU - Násztor, Zoltán AU - Kelemen, Lóránd AU - Dér, András TI - Insights into graphene oxide interaction with human serum albumin in isolated state and in blood plasma JF - INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES J2 - INT J BIOL MACROMOL VL - 175 PY - 2021 SP - 19 EP - 29 PG - 11 SN - 0141-8130 DO - 10.1016/j.ijbiomac.2021.01.151 UR - https://m2.mtmt.hu/api/publication/31876643 ID - 31876643 LA - English DB - MTMT ER - TY - THES AU - Násztor, Zoltán TI - A Hofmeister effektus vizsgálata szimulációs módszerekkel [Investigation of the Hofmeister effect utilizing computational tools] PB - Szegedi Tudományegyetem (SZTE) PY - 2020 SP - 104 DO - 10.14232/phd.10377 UR - https://m2.mtmt.hu/api/publication/31364361 ID - 31364361 LA - Hungarian DB - MTMT ER - TY - JOUR AU - Násztor, Zoltán AU - Dér, András AU - Bogár, Ferenc TI - Ion-induced alterations of the local hydration environment elucidate Hofmeister effect in a simple classical model of Trp-cage miniprotein JF - JOURNAL OF MOLECULAR MODELING J2 - J MOL MODEL VL - 23 PY - 2017 IS - 10 PG - 14 SN - 1610-2940 DO - 10.1007/s00894-017-3471-0 UR - https://m2.mtmt.hu/api/publication/3271940 ID - 3271940 AB - Protein stability is known to be influenced by the presence of Hofmeister active ions in the solution. In addition to direct ion-protein interactions, this influence manifests through the local alterations of the interfacial water structure induced by the anions and cations present in this region. In our earlier works it was pointed out that the effects of Hofmeister active salts on the stability of Trp-cage miniprotein can be modeled qualitatively using non-polarizable force fields. These simulations reproduced the structure-stabilization and structure-destabilization effects of selected kosmotropic and chaotropic salts, respectively. In the present study we use the same model system to elucidate atomic processes behind the chaotropic destabilization and kosmotropic stabilization of the miniprotein. We focus on changes of the local hydration environment of the miniprotein upon addition of NaClO4 and NaF salts to the solution. The process is separated into two parts. In the first, ‘promotion’ phase, the protein structure is fixed, and the local hydration properties induced by the simultaneous presence of protein and ions are investigated, with a special focus on the interaction of Hofmeister active anions with the charged and polar sites. In the second, ‘rearrangement’ phase we follow changes of the hydration of ions and the protein, accompanying the conformational relaxation of the protein. We identify significant factors of an enthalpic and entropic nature behind the ion-induced free energy changes of the protein-water system, and also propose a possible atomic mechanism consistent with the Collins’s rule, for the chaotropic destabilization and kosmotropic stabilization of protein conformation. LA - English DB - MTMT ER - TY - CHAP AU - Násztor, Zoltán AU - Der, A AU - Bogár, Ferenc ED - Jampilek, J ED - Marvanová, P TI - The Collins's Rule and the Hofmeister Effect as Revealed by a Simple Molecular Dynamics Model T2 - 8th Central European Conference "Chemistry towards Biology" PB - University of Veterinary Medicine, Budapest CY - Brno SN - 9788073057770 PY - 2016 SP - 52 PG - 1 UR - https://m2.mtmt.hu/api/publication/3149059 ID - 3149059 LA - English DB - MTMT ER - TY - JOUR AU - Horváth, János AU - Násztor, Zoltán AU - Bartha, Ferenc AU - Bogár, Ferenc AU - Leitgeb, Balázs TI - Characterizing the structural and folding properties of long-sequence hypomurocin B peptides and their analogs JF - BIOPOLYMERS J2 - BIOPOLYMERS VL - 106 PY - 2016 IS - 5 SP - 645 EP - 657 PG - 13 SN - 0006-3525 DO - 10.1002/bip.22870 UR - https://m2.mtmt.hu/api/publication/3104900 ID - 3104900 N1 - Hungarian Academy of Sciences, Institute of Biophysics, Biological Research Centre, Temesvári Krt. 62, Szeged, H-6726, Hungary Faculty of Medicine, Department of Medical Chemistry, University of Szeged, Dóm Tér 8, Szeged, H-6720, Hungary MTA-SZTE Supramolecular and Nanostructured Materials Research Group of Hungarian Academy of Sciences, University of Szeged, Dóm tér 8, Szeged, H-6720, Hungary Faculty of Science and Informatics, Department of Microbiology, University of Szeged, Közép Fasor 52, Szeged, H-6726, Hungary Cited By :2 Export Date: 12 December 2019 CODEN: BIPMA Correspondence Address: Leitgeb, B.; Hungarian Academy of Sciences, Institute of Biophysics, Biological Research Centre, Temesvári Krt. 62, Hungary; email: leitgeb.balazs@brc.mta.hu LA - English DB - MTMT ER - TY - JOUR AU - Násztor, Zoltán AU - Bogár, Ferenc AU - Dér, András TI - The interfacial tension concept, as revealed by fluctuations JF - CURRENT OPINION IN COLLOID & INTERFACE SCIENCE J2 - CURR OPIN COLLOID IN VL - 23 PY - 2016 SP - 29 EP - 40 PG - 12 SN - 1359-0294 DO - 10.1016/j.cocis.2016.05.007 UR - https://m2.mtmt.hu/api/publication/3077934 ID - 3077934 AB - Abstract A simple, didactic model that could have conclusively interpreted the complexity of specific salt (Hofmeister-) effects on protein solubility and function, using a single physical quantity as a central parameter, has long been missing. Via surveying a row of recent papers we show in this review that a phenomenological formalism based on the salt-induced change of protein–water interfacial tension (∆γ) is able to account for a wide range of Hofmeister effects, including also such “exceptions”, where inverse or “V-shaped” Hofmeister series occurs. A close relationship between protein–water interfacial tension and conformational fluctuations is pinpointed on theoretical grounds, then it is shown how one can use a complex experimental arsenal to demonstrate conformational fluctuations on two prototypical proteins, the membrane protein bacteriorhodopsin and the cytoplasmic protein myoglobin. Finally, via the results of recent and new molecular dynamics simulations on a model peptide, the tryptophan-cage miniprotein, independent evidences are given in favor of the interfacial tension concept, at the same time demonstrating the predictive power of the theory. It is shown that salt-induced fluctuation changes of surface-exposed amino acid groups can be used as a sensitive measure for mapping the local features of Hofmeister effects on protein conformations. General implications of the interfacial tension concept are also discussed. LA - English DB - MTMT ER - TY - JOUR AU - Násztor, Zoltán AU - Horváth, János AU - Leitgeb, Balázs TI - Studying the Structural and Folding Features of Long-Sequence Trichobrachin Peptides JF - CHEMISTRY & BIODIVERSITY J2 - CHEM BIODIVERS VL - 12 PY - 2015 IS - 9 SP - 1365 EP - 1377 PG - 13 SN - 1612-1872 DO - 10.1002/cbdv.201400280 UR - https://m2.mtmt.hu/api/publication/2974666 ID - 2974666 N1 - Cited By :1 Export Date: 11 February 2020 CODEN: CBHIA Correspondence Address: Leitgeb, B.; Institute of Biophysics, Biological Research Centre, Hungarian Academy of Sciences, Temesvári krt. 62, Hungary AB - In this theoretical study, the folding processes of long-sequence trichobrachin peptides (i.e., TB IIb peptides) were investigated by molecular dynamics methods. The formation of various helical structures (i.e., 310-, α-, and left-handed α-helices) was studied with regard to the entire sequence of peptides, as well as to each amino acid. The results pointed out that TB IIb molecules showed a propensity to form helical conformations, and they could be characterized by 310-helical structure rather than by α-helical structure. The formation of local (i.e., i←i+3 and i←i+4) as well as of non-local (i.e., i←i+n, where n>4; and all i→i+n) H-bonds was also examined. The results revealed that the occurrence of local, helix-stabilizing H-bonds was in agreement with the appearance of helical conformations, and the non-local H-bonds did not produce relevant effects on the evolution of helical structures. Based on the data obtained by our structural investigation, differences were observed between the TB IIb peptides, according to the type of amino acid located in the 17th position of their sequences. In summary, the folding processes were explored for TB IIb molecules, and our theoretical study led to the conclusion that these long-sequence peptaibols showed characteristic structural and folding features. © 2015 Verlag Helvetica Chimica Acta AG, Zrich. LA - English DB - MTMT ER - TY - JOUR AU - Bogár, Ferenc AU - Simon, Dóra AU - Bozsó, Zsolt AU - Janáky, Tamás AU - Veszelka, Szilvia AU - Tóth, Andrea AU - Deli, Mária Anna AU - Borics, Attila AU - Násztor, Zoltán AU - Gyebrovszki, A AU - Penke, Botond AU - Fülöp, Lívia TI - Opposite effect of Ca2+/Mg2+ ions on the aggregation of native and precursor-derived Aβ42 JF - STRUCTURAL CHEMISTRY J2 - STRUCT CHEM VL - 26 PY - 2015 IS - 5-6 SP - 1389 EP - 1403 PG - 15 SN - 1040-0400 DO - 10.1007/s11224-015-0660-2 UR - https://m2.mtmt.hu/api/publication/2942329 ID - 2942329 LA - English DB - MTMT ER - TY - JOUR AU - Násztor, Zoltán AU - Horváth, János AU - Leitgeb, Balázs TI - In Silico Conformational Analysis of the Short-Sequence Hypomurocin A Peptides JF - INTERNATIONAL JOURNAL OF PEPTIDES J2 - INT J PEPTIDES VL - 2015 PY - 2015 PG - 6 SN - 1687-9767 DO - 10.1155/2015/281065 UR - https://m2.mtmt.hu/api/publication/2807137 ID - 2807137 N1 - Admin megjegyzés-24425328 #JournalID1# Name: INT J PEPT ISSN: 1687-9767 #JournalID2# LA - English DB - MTMT ER - TY - JOUR AU - Bogár, Ferenc AU - Bartha, Ferenc AU - Násztor, Zoltán AU - Fábián, László AU - Leitgeb, Balázs AU - Dér, András TI - On the Hofmeister Effect: Fluctuations at the Protein-Water Interface and the Surface Tension. JF - JOURNAL OF PHYSICAL CHEMISTRY B J2 - J PHYS CHEM B VL - 118 PY - 2014 IS - 29 SP - 8496 EP - 8504 PG - 9 SN - 1520-6106 DO - 10.1021/jp502505c UR - https://m2.mtmt.hu/api/publication/2711661 ID - 2711661 AB - We performed mol. dynamics simulations on the tryptophane-cage miniprotein using a nonpolarizable force field, in order to model the effect of concd. water solns. of neutral salts on protein conformation, which is a manifestation of Hofmeister effects. From the equil. values and the fluctuations of the solvent accessible surface area of the miniprotein, the salt-induced changes of the mean value of protein-water interfacial tension were detd. At 300 K, the chaotropic ClO4- and NO3- decreased the interfacial tension according to their position in the Hofmeister series (by approx. 5 and 2.7 mN/m, resp.), while the kosmotropic F- increased it (by 1 mN/m). These values were compared to those obtained from the Gibbs equation using the excess surface adsorption calcd. from the probability distribution of the water mols. and ions around the miniprotein, and the two sets were found to be very close to each other. Our results present a direct evidence for the central role of interfacial tension and fluctuations at the protein-water interface in Hofmeister phenomena, and provide a computational method for the detn. of the protein-water interfacial tension, establishing a link between the phenomenol. and microscopic description of protein-water interfaces. [on SciFinder(R)] LA - English DB - MTMT ER -