@article{MTMT:2421415,
	title = {Viability, Longevity, and Egg Production ofDrosophila melanogasterAre Regulatedby the miR-282 microRNA},
	url = {https://m2.mtmt.hu/api/publication/2421415},
	author = {Vilmos, Péter and Bujna, Ágnes and Szuperák, Milán and Havelda, Zoltán and Várallyay, Éva and Szabad, János and Kucerova, L and Somogyi, Kálmán and Kristó, Ildikó and Lukacsovich, Tamás and Jankovics, Ferenc and Henn, László and Erdélyi, Miklós},
	doi = {10.1534/genetics.113.153585},
	journal-iso = {GENETICS},
	journal = {GENETICS},
	volume = {195},
	unique-id = {2421415},
	issn = {0016-6731},
	abstract = {The first microRNAs were discovered some 20 years ago, but only a small fraction of the microRNA-encoding genes have been described in detail yet. Here we report the molecular analysis of a computationally predicted Drosophila melanogaster microRNA gene, mir-282. We show that the mir-282 gene is the source of a 4.9 kb long primary transcript with a 5' cap and a 3' polyA sequence and a mature microRNA of about 25 bp. Our data strongly suggest the existence of an independent mir-282 gene conserved in holometabolic insects. We give evidence that the mir-282 locus encodes a functional transcript which influences viability, longevity, and egg production in Drosophila. We identify the nervous system-specific adenylate cyclase (rutabaga) as a target of miR-282 and assume that one of the main functions of mir-282 is the regulation of adenylate cyclase activity in the nervous system during metamorphosis.},
	year = {2013},
	eissn = {1943-2631},
	pages = {469-480}
}

@article{MTMT:2046742,
	title = {CalpB modulates border cell migration in Drosophila egg chambers},
	url = {https://m2.mtmt.hu/api/publication/2046742},
	author = {Kókai, Endre and Páldy, FS and Somogyi, Kálmán and Chougule, Anil and Pál, Margit and Kerekes, Éva and Deák, Péter and Friedrich, P and Dombrádi, Viktor Béla and Ádám, Géza},
	doi = {10.1186/1471-213X-12-20},
	journal-iso = {BMC DEV BIOL},
	journal = {BMC DEVELOPMENTAL BIOLOGY},
	volume = {12},
	unique-id = {2046742},
	issn = {1471-213X},
	year = {2012}
}

@article{MTMT:1921728,
	title = {Western Palaearctic phylogeography of an inquiline oak gall wasp, Synergus umbraculus},
	url = {https://m2.mtmt.hu/api/publication/1921728},
	author = {Bihari, Péter and Sipos, Botond and Melika, George and Feher, B and Somogyi, Kálmán and Stone, GN and Pénzes, Zsolt},
	doi = {10.1111/j.1095-8312.2010.01609.x},
	journal-iso = {BIOL J LINN SOC},
	journal = {BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY},
	volume = {102},
	unique-id = {1921728},
	issn = {0024-4066},
	abstract = {Insect-induced galls on plants comprise species-rich but self-contained communities of herbivores and natural enemies. In the present study, we focus on galls induced by cynipid gall wasps on oaks, and on the least-known trophic level that these galls contain: inquilines. These insects, also cynipids, feed on gall tissue and are an abundant but taxonomically poorly understood part of an otherwise well-studied system. We used DNA sequence data to examine spatial patterns in the genetic diversity of Synergus umbraculus Olivier 1791 (Hymenoptera: Cynipidae: Synergini), a widespread species attacking many host galls across the Western Palaearctic. Analysis of 239 cytochrome b sequences revealed eight haplogroups showing significant phylogeographic pattern across the Western Palaearctic, corresponding to putative glacial refugia in Iberia, Central Europe, Turkey, and Iran. There were significant genetic discontinuities across the Pyrenees and the Anatolian diagonal but no impact of the Alps, suggesting that significant discontinuities have biotic rather than physical causes. Detailed analysis of sites in the Carpathian Basin reveal a high diversity and low spatial structure, and identify Central Europe as the source of colonists for Quaternary colonization of Germany, France, and Britain. We found no evidence for host-associated differentiation of S. umbraculus lineages associated with the most common cynipid host galls, suggesting frequent shifts within the host gall assemblage by inquiline lineages. (c) 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 102, 750-764.},
	keywords = {COLONIZATION; Hexapoda; taxonomy; Central Europe; mitochondrial DNA; Hymenoptera; GENETIC DIFFERENTIATION; TURKEY; Species richness; Trophic level; Herbivory; Quercus; refugium; Phylogeography; Palearctic region; Cytochrome; Iran; host range; natural enemy; WASP; Synergus; Synergini; Cynipini; gall; MtDNA diversity; Host association; Cynipidae},
	year = {2011},
	eissn = {1095-8312},
	pages = {750-764},
	orcid-numbers = {Pénzes, Zsolt/0000-0003-0447-5997}
}

@article{MTMT:1921481,
	title = {A conserved gene cluster as a putative functional unit in insect innate immunity},
	url = {https://m2.mtmt.hu/api/publication/1921481},
	author = {Somogyi, Kálmán and Sipos, Botond and Pénzes, Zsolt and Andó, István},
	doi = {10.1016/j.febslet.2010.10.014},
	journal-iso = {FEBS LETT},
	journal = {FEBS LETTERS},
	volume = {584},
	unique-id = {1921481},
	issn = {0014-5793},
	abstract = {The Nimrod gene superfamily is an important component of the innate immune response. The majority of its member genes are located in close proximity within the Drosophila melanogaster genome and they lie in a larger conserved cluster ("Nimrod cluster"), made up of non-related groups (families, superfamilies) of genes. This cluster has been a part of the Arthropod genomes for about 300-350 million years. The available data suggest that the Nimrod cluster is a functional module of the insect innate immune response. (C) 2010 Federation of European Biochemical Societies. Published by Elsevier B. V. All rights reserved.},
	year = {2010},
	eissn = {1873-3468},
	pages = {4375-4378},
	orcid-numbers = {Pénzes, Zsolt/0000-0003-0447-5997; Andó, István/0000-0002-4648-9396}
}

@article{MTMT:1920757,
	title = {Sessile hemocytes as a hematopoietic compartment in drosophila melanogaster},
	url = {https://m2.mtmt.hu/api/publication/1920757},
	author = {Márkus, Róbert and Laurinyecz, Barbara and Kurucz, Judit Éva and Honti, Viktor and Bajusz, Izabella and Sipos, Botond and Somogyi, Kálmán and Kronhamn, J and Hultmark, D and Andó, István},
	doi = {10.1073/pnas.0801766106},
	journal-iso = {P NATL ACAD SCI USA},
	journal = {PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA},
	volume = {106},
	unique-id = {1920757},
	issn = {0027-8424},
	year = {2009},
	eissn = {1091-6490},
	pages = {4805-4809},
	orcid-numbers = {Laurinyecz, Barbara/0000-0003-0620-2239; Andó, István/0000-0002-4648-9396}
}

@article{MTMT:1657683,
	title = {Systematic re-appraisal of the gall-usurping wasp genus Synophrus Hartig, 1843 (Hymenoptera: Cynipidae: Synergini)},
	url = {https://m2.mtmt.hu/api/publication/1657683},
	author = {Pénzes, Zsolt and Melika, George and Bozsóki, Zoltán and Bihari, Péter and ISTVÁN, MIKÓ and MAJID, TAVAKOLI and JULI, PUJADE-VILLAR and BALÁZS, FEHÉR and Fülöp, Dávid Krisztián and Szabó, Krisztián and Bozsó, Miklós and Sipos, Botond and Somogyi, Kálmán and GRAHAM, N STONE},
	doi = {10.1111/j.1365-3113.2009.00482.x},
	journal-iso = {SYST ENTOMOL},
	journal = {SYSTEMATIC ENTOMOLOGY},
	volume = {34},
	unique-id = {1657683},
	issn = {0307-6970},
	abstract = {Several unanswered questions remain regarding the taxonomy and phylogeny of inquiline gallwasps (Cynipidae: Synergini), obligate inhabitants of plant galls induced primarily by other gallwasps (Cynipidae: Cynipini and Diplolepidini). Here we use morphological and molecular data to revise the inquiline genus Synophrus, members of which are notable for extensively modifying the structure of galls induced by oak gallwasp hosts on oaks in the section Cerris of Quercus subgenus Quercus in the Western Palaearctic. Previous taxonomic treatments have recognized three Western Palaearctic species of Synophrus: S. pilulae, S. politus and S. olivieri. Our results support the establishment of four additional Western Palaearctic species: Synophrus hungaricussp.n., S. libanisp.n., S. syriacussp.n. and S. hispanicussp.n. We describe and diagnose these new taxa, analyse their phylogenetic relationships, and show that Synophrus inquilines are able to impose their own gall phenotypes on those of their hosts. We provide an updated key to Synophrus.},
	year = {2009},
	eissn = {1365-3113},
	pages = {688-711},
	orcid-numbers = {Pénzes, Zsolt/0000-0003-0447-5997; Bozsóki, Zoltán/0000-0002-4267-9969; Fülöp, Dávid Krisztián/0000-0002-1300-0080}
}

@article{MTMT:1918046,
	title = {Evolution of Genes and Repeats in the Nimrod Superfamily},
	url = {https://m2.mtmt.hu/api/publication/1918046},
	author = {Somogyi, Kálmán and Sipos, Botond and Pénzes, Zsolt and Kurucz, Judit Éva and Zsámboki, János and Hultmark, D and Andó, István},
	doi = {10.1093/molbev/msn180},
	journal-iso = {MOL BIOL EVOL},
	journal = {MOLECULAR BIOLOGY AND EVOLUTION},
	volume = {25},
	unique-id = {1918046},
	issn = {0737-4038},
	abstract = {The recently identified Nimrod superfamily is characterized by the presence of a special type of EGF repeat, the NIM repeat, located right after a typical CCXGY/W amino acid motif. On the basis of structural features, nimrod genes can be divided into three types. The proteins encoded by Draper-type genes have an EMI domain at the N-terminal part and only one copy of the NIM motif, followed by a variable number of EGF-like repeats. The products of Nimrod B-type and Nimrod C-type genes (including the eater gene) have different kinds of N-terminal domains, and lack EGF-like repeats but contain a variable number of NIM repeats. Draper and Nimrod C-type (but not Nimrod B-type) proteins carry a transmembrane domain. Several members of the superfamily were claimed to function as receptors in phagocytosis and/or binding of bacteria, which indicates an important role in the cellular immunity and the elimination of apoptotic cells. In this paper, the evolution of the Nimrod superfamily is studied with various methods on the level of genes and repeats. A hypothesis is presented in which the NIM repeat, along with the EMI domain, emerged by structural reorganizations at the end of an EGF-like repeat chain, suggesting a mechanism for the formation of novel types of repeats. The analyses revealed diverse evolutionary patterns in the sequences containing multiple NIM repeats. Although in the Nimrod B and Nimrod C proteins show characteristics of independent evolution, many internal NIM repeats in Eater sequences seem to have undergone concerted evolution. An analysis of the nimrod genes has been performed using phylogenetic and other methods and an evolutionary scenario of the origin and diversification of the Nimrod superfamily is proposed. Our study presents an intriguing example how the evolution of multigene families may contribute to the complexity of the innate immune response.},
	year = {2008},
	eissn = {1537-1719},
	pages = {2337-2347},
	orcid-numbers = {Pénzes, Zsolt/0000-0003-0447-5997; Andó, István/0000-0002-4648-9396}
}

@article{MTMT:1916855,
	title = {T2prhd: a tool to study the patterns of repeat evolution},
	url = {https://m2.mtmt.hu/api/publication/1916855},
	author = {Sipos, Botond and Somogyi, Kálmán and Andó, István and Pénzes, Zsolt},
	doi = {10.1186/1471-2105-9-27},
	journal-iso = {BMC BIOINFORMATICS},
	journal = {BMC BIOINFORMATICS},
	volume = {9},
	unique-id = {1916855},
	issn = {1471-2105},
	abstract = {Background: The models developed to characterize the evolution of multigene families (such as the birth-and-death and the concerted models) have also been applied on the level of sequence repeats inside a gene/protein. Phylogenetic reconstruction is the method of choice to study the evolution of gene families and also sequence repeats in the light of these models. The characterization of the gene family evolution in view of the evolutionary models is done by the evaluation of the clustering of the sequences with the originating loci in mind. As the locus represents positional information, it is straightforward that in the case of the repeats the exact position in the sequence should be used, as the simple numbering according to repeat order can be misleading. Results: We have developed a novel rapid visual approach to study repeat evolution, that takes into account the exact repeat position in a sequence. The "pairwise repeat homology diagram" visualizes sequence repeats detected by a profile HMM in a pair of sequences and highlights their homology relations inferred by a phylogenetic tree. The method is implemented in a Perl script (t2prhd) available for downloading at http://t2prhd.sourceforge.net and is also accessible as an online tool at http://t2prhd.brc.hu. The power of the method is demonstrated on the EGF-like and fibronectin-III-like (Fn-III) domain repeats of three selected mammalian Tenascin sequences. Conclusion: Although pairwise repeat homology diagrams do not carry all the information provided by the phylogenetic tree, they allow a rapid and intuitive assessment of repeat evolution. We believe, that t2prhd is a helpful tool with which to study the pattern of repeat evolution. This method can be particularly useful in cases of large datasets (such as large gene families), as the command line interface makes it possible to automate the generation of pairwise repeat homology diagrams with the aid of scripts.},
	year = {2008},
	eissn = {1471-2105},
	pages = {AR27},
	orcid-numbers = {Andó, István/0000-0002-4648-9396; Pénzes, Zsolt/0000-0003-0447-5997}
}

@article{MTMT:1657711,
	title = {New species of oak gallwaps from Iran (Hymenoptera: Cynipidae: Cynipini)},
	url = {https://m2.mtmt.hu/api/publication/1657711},
	author = {Tavakoli, M and Melika, G and Sadeghi, SE and Pénzes, Zsolt and Assareh, MA and Atkinson, R and Bechtold, M and Miko, I and Zargaran, MR and Aligolizade, D and Barimani, H and Bihari, Péter and Pirozi, F and Fülöp, Dávid Krisztián and Somogyi, Kálmán and Challis, R and Preuss, S and Nicholls, J and Stone, GN},
	doi = {10.11646/zootaxa.1699.1.1},
	journal-iso = {ZOOTAXA},
	journal = {ZOOTAXA},
	volume = {2008},
	unique-id = {1657711},
	issn = {1175-5326},
	abstract = {Fourteen new species of oak gallwasps, Andricus istvani, Andricus assarehi, Andricus schoenroggei, Andricus csokai, Andricus chodjaii, Andricus megatruncicolus, Andricus coriariformis, Andricus libani, Andricus stellatus, Andricus pseudoaries, Andricus sadeghii, Andricus atkinsonae, Andricus pujadevillari and Dryocosmus caspiensis ( Hymenoptera: Cynipidae: Cynipini) are described from Iran. Data on the diagnosis, distribution and biology of new species are given.},
	keywords = {Biology; MORPHOLOGY; taxonomy; distribution; Hymenoptera; Andricus; Dryocosmus; Oak gallwasp; Cynipini; Cynipidae},
	year = {2008},
	eissn = {1175-5334},
	pages = {1-64},
	orcid-numbers = {Pénzes, Zsolt/0000-0003-0447-5997; Fülöp, Dávid Krisztián/0000-0002-1300-0080}
}

@inbook{MTMT:1657720,
	title = {A Kárpát-medence tölgyön élő gubacsdarazsai},
	url = {https://m2.mtmt.hu/api/publication/1657720},
	author = {Melika, G and Pénzes, Zsolt and Mikó, I and Bihari, Péter and Ács, Zoltán and Somogyi, Kálmán and Bozsóki, Zoltán and Szabó, Krisztián and Bechtold, M and Fári, Karolina and Fehér, B and Fülöp, Dávid Krisztián and Csóka, György and Stone, G N},
	booktitle = {A Kárpát-medence állatvilágának kialakulása},
	unique-id = {1657720},
	year = {2007},
	pages = {165-174},
	orcid-numbers = {Pénzes, Zsolt/0000-0003-0447-5997; Ács, Zoltán/0000-0003-3182-2608; Bozsóki, Zoltán/0000-0002-4267-9969; Fülöp, Dávid Krisztián/0000-0002-1300-0080; Csóka, György/0000-0001-9132-4825}
}