TY - JOUR AU - Pham, Hong Diep AU - Pólya, Sára Erzsébet AU - Lantos, Brigitta AU - Szenthe, Kálmán AU - Sági-Kazár, Máté AU - Bánkúti, Barbara AU - Bánáti, Ferenc AU - Sárvári, Éva AU - Fodor, Ferenc AU - Tamás, László AU - Philippar, Katrin AU - Solti, Ádám TI - The developmental and iron nutritional pattern of PIC1 and NiCo does not support their interdependent and exclusive collaboration in chloroplast iron transport in Brassica napus JF - PLANTA J2 - PLANTA VL - 251 PY - 2020 IS - 5 PG - 16 SN - 0032-0935 DO - 10.1007/s00425-020-03388-0 UR - https://m2.mtmt.hu/api/publication/31283876 ID - 31283876 N1 - Department of Plant Physiology and Molecular Plant Biology, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary RT-Europe Nonprofit Research Ltd., Mosonmagyaróvár, Hungary Center for Human - and Molecular Biology, Plant Biology, Saarland University, Saarbrücken, Germany Cited By :7 Export Date: 24 June 2022 CODEN: PLANA Correspondence Address: Solti, Á.; Department of Plant Physiology and Molecular Plant Biology, Hungary; email: adam.solti@ttk.elte.hu LA - English DB - MTMT ER - TY - JOUR AU - Éva, Csaba AU - Oszvald, Mária AU - Tamás, László TI - Current and possible approaches for improving photosynthetic efficiency JF - PLANT SCIENCE J2 - PLANT SCI VL - 280 PY - 2019 SP - 433 EP - 440 PG - 8 SN - 0168-9452 DO - 10.1016/j.plantsci.2018.11.010 UR - https://m2.mtmt.hu/api/publication/30605351 ID - 30605351 N1 - Export Date: 18 November 2019 CODEN: PLSCE Correspondence Address: Éva, C.; Applied Genomics Department, Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of SciencesHungary; email: eva.csaba@agrar.mta.hu Cited By :2 Export Date: 2 July 2020 CODEN: PLSCE Correspondence Address: Éva, C.; Applied Genomics Department, Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of SciencesHungary; email: eva.csaba@agrar.mta.hu Cited By :5 Export Date: 20 January 2021 CODEN: PLSCE Correspondence Address: Éva, C.; Applied Genomics Department, Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of SciencesHungary; email: eva.csaba@agrar.mta.hu Chemicals/CAS: carbon, 7440-44-0; carbon dioxide, 124-38-9, 58561-67-4; ribulosebisphosphate carboxylase, 9027-23-0; Carbon; Carbon Dioxide; Ribulose-Bisphosphate Carboxylase Funding details: 121322 NKFI PD_16 Funding text 1: We thank valuable discussions on the subject to Dr. Éva Sárvári and Dr. Ádám Solti (Department of Plant Physiology and Molecular Plant Biology, ELTE University, Budapest), and also to Dr. Angéla Juhász (State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Murdoch, Australia). The work has been supported by the National Research, Development and Innovation Office (the Hungarian abbreviation is NKFI) no. 121322 NKFI PD_16 grant. LA - English DB - MTMT ER - TY - CHAP AU - Éva, Csaba AU - Oszvald, Mária AU - Tamás, László ED - Garab, Győző ED - Janda, Tibor ED - Darkó, Éva ED - Pál, Magda ED - Pusztai, Magdolna ED - Solymosi, Katalin ED - Zsiros, Ottó TI - Lehetőségek a fotoszintetikus hatékonyság javítására T2 - Hazai Fotoszintézis-kutatók Találkozója PB - Fotoszintézis - Élet a a fényből Alapítvány CY - Mátrafüred SN - 9786150037509 PY - 2018 SP - 12 EP - 12 PG - 1 UR - https://m2.mtmt.hu/api/publication/30630033 ID - 30630033 LA - Hungarian DB - MTMT ER - TY - JOUR AU - Éva, Csaba AU - Szőkéné Pázsi, Kitti AU - Makai, Szabolcs AU - Gell, Gyöngyvér Mónika AU - Fábián, Attila László AU - Poczkodi, Edina AU - Tóth, Gábor AU - Sági, László AU - Tamás, László AU - Juhász, Angéla TI - In Vivo DNA Affinity Purification and Histone Deacetylase Inhibitor Treatment Proves the Role of Histone Acetylation in the Expression Regulation of High-Molecular-Weight Glutenin Genes JF - PLANT MOLECULAR BIOLOGY REPORTER J2 - PLANT MOL BIOL REP VL - 36 PY - 2018 IS - 5-6 SP - 750 EP - 763 PG - 14 SN - 0735-9640 DO - 10.1007/s11105-018-1117-8 UR - https://m2.mtmt.hu/api/publication/30310607 ID - 30310607 N1 - \n Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, Hungary \n Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Budapest, Hungary \n State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Murdoch, WA 6150, Australia \n Export Date: 7 November 2018 \n Article in Press \n Correspondence Address: Juhász, A.; Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of SciencesHungary; email: A.Juhasz@murdoch.edu.au Funding Agency and Grant Number: NKFI PD_16 [121322]; [OTKA K100881] Funding text: This research has been supported by grants OTKA K100881 and NKFI PD_16 no. 121322. Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, Hungary Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Budapest, Hungary State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Murdoch, WA 6150, Australia Export Date: 18 November 2019 Correspondence Address: Juhász, A.; Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of SciencesHungary; email: A.Juhasz@murdoch.edu.au AB - High-molecular-weight glutenin subunit (HMW GS) proteins are major components of the gluten matrix, which is the physical basis of bread-making in wheat. Epigenetic and transcriptional regulations of HMW GS genes were studied both in silico and in wet lab to understand their tissue (endosperm) specific expression. Our co-expressional network analysis identified key transcription factor (TF) genes that regulate HMW GS genes. We also show here that HMW GS genes are inhibited in vegetative tissues by histone deacetylation as revealed by strong GUS expression in vascular tissues of transgenic barley seedlings harbouring HMW GS gene promoter::uidA-reporter gene fusions upon treatment with a histone deacetylase inhibitor. A novel method termed in vivo DNA affinity purification (IP) has been developed here for the isolation of histones and transcription factors binding to target DNA regions. The technique is based on the biolistic introduction of biotinylated PCR probes amplified from HMW GS gene promoters into wheat leaves. Twenty-four hours later, the probe is cross-linked with interacting factors and subsequently re-purified from plant nuclear extracts. Many proteins, ribosomal proteins and histones have so far been isolated. No lysine-acetylated histone protein fragments were found which further highlight the inhibiting effect of histone deacetylation on HMW GS gene expression. © 2018, Springer Science+Business Media, LLC, part of Springer Nature. LA - English DB - MTMT ER - TY - GEN AU - Knapp, Dániel AU - Németh, JB AU - Johnson, J AU - Kuo, A AU - Lim, J AU - Lipzen, A AU - Nolan, M AU - Ohm, R AU - Hainaut, M AU - Henrissat, B AU - Tamás, László AU - Barry, K AU - Grigoriev, IV AU - Spatafora, JW AU - Nagy, LG AU - Kovács, GM TI - Comparative genomics reveals functional diversity in two dark septate endophytic (DSE) fungi PY - 2018 UR - https://m2.mtmt.hu/api/publication/3407230 ID - 3407230 LA - English DB - MTMT ER - TY - JOUR AU - Knapp, Dániel AU - Németh, Julianna AU - Barry, Kerrie AU - Hainaut, Matthieu AU - Henrissat, Bernard AU - Johnson, Jenifer AU - Kuo, Alan AU - Lim, Joanne Hui Ping AU - Lipzen, Anna AU - Nolan, Matt AU - Ohm, Robin A AU - Tamás, László AU - Grigoriev, Igor V AU - Spatafora, Joseph W AU - Nagy, László AU - Kovács, M. Gábor TI - Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi JF - SCIENTIFIC REPORTS J2 - SCI REP VL - 8 PY - 2018 IS - 1 PG - 13 SN - 2045-2322 DO - 10.1038/s41598-018-24686-4 UR - https://m2.mtmt.hu/api/publication/3364804 ID - 3364804 N1 - Cited By :1 Export Date: 26 December 2018 Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Budapest, 1117, Hungary US Department of Energy (DOE), Joint Genome Institute, Walnut Creek, CA 94598, United States Architecture et Fonction des Macromolécules Biologiques (AFMB), UMR 7257 CNRS Université Aix-Marseille, Marseille, 13288, France INRA, USC 1408 AFMB, Marseille, 13288, France Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia Microbiology, Department of Biology, Faculty of Science, Utrecht University, Utrecht, Netherlands Department of Plant Physiology and Molecular Plant Biology, Institute of Biology, Eötvös Loránd University, Budapest, 1117, Hungary Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, United States Department of Botany and Plant Pathology, Oregon State University, Corvallis, United States Synthetic and Systems Biology Unit, Institute of Biochemistry, BRC-HAS, Szeged, 6726, Hungary Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, 1022, Hungary Cited By :1 Export Date: 9 January 2019 Correspondence Address: Kovács, G.M.; Department of Plant Anatomy, Institute of Biology, Eötvös Loránd UniversityHungary; email: gmkovacs@caesar.elte.hu Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Budapest, 1117, Hungary US Department of Energy (DOE), Joint Genome Institute, Walnut Creek, CA 94598, United States Architecture et Fonction des Macromolécules Biologiques (AFMB), UMR 7257 CNRS Université Aix-Marseille, Marseille, 13288, France INRA, USC 1408 AFMB, Marseille, 13288, France Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia Microbiology, Department of Biology, Faculty of Science, Utrecht University, Utrecht, Netherlands Department of Plant Physiology and Molecular Plant Biology, Institute of Biology, Eötvös Loránd University, Budapest, 1117, Hungary Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, United States Department of Botany and Plant Pathology, Oregon State University, Corvallis, United States Synthetic and Systems Biology Unit, Institute of Biochemistry, BRC-HAS, Szeged, 6726, Hungary Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, 1022, Hungary Cited By :11 Export Date: 27 February 2020 Correspondence Address: Kovács, G.M.; Department of Plant Anatomy, Institute of Biology, Eötvös Loránd UniversityHungary; email: gmkovacs@caesar.elte.hu Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Budapest, 1117, Hungary US Department of Energy (DOE), Joint Genome Institute, Walnut Creek, CA 94598, United States Architecture et Fonction des Macromolécules Biologiques (AFMB), UMR 7257 CNRS Université Aix-Marseille, Marseille, 13288, France INRA, USC 1408 AFMB, Marseille, 13288, France Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589, Saudi Arabia Microbiology, Department of Biology, Faculty of Science, Utrecht University, Utrecht, Netherlands Department of Plant Physiology and Molecular Plant Biology, Institute of Biology, Eötvös Loránd University, Budapest, 1117, Hungary Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, United States Department of Botany and Plant Pathology, Oregon State University, Corvallis, United States Synthetic and Systems Biology Unit, Institute of Biochemistry, BRC-HAS, Szeged, 6726, Hungary Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, 1022, Hungary Cited By :17 Export Date: 14 July 2020 Correspondence Address: Kovács, G.M.; Department of Plant Anatomy, Institute of Biology, Eötvös Loránd UniversityHungary; email: gmkovacs@caesar.elte.hu AB - Dark septate endophytes (DSE) are a form-group of root endophytic fungi with elusive functions. Here, the genomes of two common DSE of semiarid areas, Cadophora sp. and Periconia macrospinosa were sequenced and analyzed with another 32 ascomycetes of different lifestyles. Cadophora sp. (Helotiales) and P. macrospinosa (Pleosporales) have genomes of 70.46 Mb and 54.99 Mb with 22,766 and 18,750 gene models, respectively. The majority of DSE-specific protein clusters lack functional annotation with no similarity to characterized proteins, implying that they have evolved unique genetic innovations. Both DSE possess an expanded number of carbohydrate active enzymes (CAZymes), including plant cell wall degrading enzymes (PCWDEs). Those were similar in three other DSE, and contributed a signal for the separation of root endophytes in principal component analyses of CAZymes, indicating shared genomic traits of DSE fungi. Number of secreted proteases and lipases, aquaporins, and genes linked to melanin synthesis were also relatively high in our fungi. In spite of certain similarities between our two DSE, we observed low levels of convergence in their gene family evolution. This suggests that, despite originating from the same habitat, these two fungi evolved along different evolutionary trajectories and display considerable functional differences within the endophytic lifestyle. LA - English DB - MTMT ER - TY - CHAP AU - Éva, Csaba AU - Makai, Szabolcs AU - Szőkéné Pázsi, Kitti AU - Moncsek, B AU - Sági, László AU - Tamás, László AU - Juhász, Angéla ED - Tamás, László ED - Zelenyánszki, Helga TI - Histone acetylation and promoter-binding bzip transcription factors ensure tissue-specificity of HMW GS genes in wheat T2 - Fiatal Biotechnológusok Országos Konferenciája "FIBOK 2018": Abstract Book PB - JATEPress CY - Szeged SN - 9789633153703 PY - 2018 SP - 38 UR - https://m2.mtmt.hu/api/publication/3356455 ID - 3356455 LA - English DB - MTMT ER - TY - CHAP AU - Réka, Rugonfalvi Kiss AU - Zelenyánszki, Helga AU - Pólya, Sára Erzsébet AU - Solti, Ádám AU - Tamás, László ED - Tamás, László ED - Zelenyánszki, Helga TI - Optimising CRISPR/Cas9 system to produce gene-edited barley plants T2 - Fiatal Biotechnológusok Országos Konferenciája "FIBOK 2018": Abstract Book PB - JATEPress CY - Szeged SN - 9789633153703 PY - 2018 SP - 128 UR - https://m2.mtmt.hu/api/publication/3355194 ID - 3355194 LA - English DB - MTMT ER - TY - CHAP AU - Halasy, Viktória AU - Kovács, Krisztina AU - Klencsár, Zoltán AU - Homonnay, Zoltán AU - Fodor, Ferenc AU - Tamás, László AU - Solti, Ádám AU - Pólya, Sára Erzsébet ED - Tamás, László ED - Zelenyánszki, Helga TI - Quantitative real-time PCR analysis of the utilization of an iron-containing nanomaterial by a dicot model plant T2 - Fiatal Biotechnológusok Országos Konferenciája "FIBOK 2018": Abstract Book PB - JATEPress CY - Szeged SN - 9789633153703 PY - 2018 SP - 119 EP - 119 PG - 1 UR - https://m2.mtmt.hu/api/publication/3355189 ID - 3355189 LA - English DB - MTMT ER - TY - BOOK ED - Tamás, László ED - Zelenyánszki, Helga TI - Fiatal Biotechnológusok Országos Konferenciája "FIBOK 2018": Abstract Book ET - 0 PB - JATEPress CY - Szeged PY - 2018 SN - 9789633153703 UR - https://m2.mtmt.hu/api/publication/3354772 ID - 3354772 LA - English DB - MTMT ER -