1.
Turek, Cezary ; Olbei, Marton* ; Stirling, Tamas* ; Fekete, Gergely ; Tasnadi, Ervin ; Gul, Leila ; Bohar, Balazs ; Papp, Balazs ; Jurkowski, Wiktor ; Ari, Eszter ✉
bioRxive, (ISSN 2692-8205),
Publication:34718081 Published Core Miscellaneous (Publication in repository ) Scientific
Publication in repository (Miscellaneous) | Scientific[34718081] [Approved]
2.
Daruka, L ; Márton, Simon Czikkely* ; Petra, Szili* ; Zoltán, Farkas* ; Dávid, Balogh ; Elvin, Maharramov ; Thu-Hien, Vu ; Levente, Sipos ; Botond, Dávid Vincze ; Gábor, Grézal et al.
Locked Publication:34158052 Admin approved Core Citing Miscellaneous (Publication in repository ) Scientific
Citing papers: 1 | Independent citation: 1 | Self citation: 0 | Unknown citation: 0 | Number of citations with DOI: 1
Publication in repository (Miscellaneous) | Scientific[34158052] [Admin approved]
All citations+mentions: 1, External citations: 1, Self citations: 0, Unhandled citations: 0
  1. Martiny Hannah-Marie et al. ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets. (2024) Bioinformatics (Oxford, England) 1367-4811 0
3.
MOLECULAR BIOLOGY AND EVOLUTION 182 Paper: msad182 , 18 p. (2023)
Locked Publication:33549439 Admin approved Core Citing Journal Article (Article ) Scientific
Citing papers: 9 | Independent citation: 2 | Self citation: 7 | Unknown citation: 0 | Number of citations in WoS: 2 | Number of citations in Scopus: 3 | WoS/Scopus assigned: 4 | Number of citations with DOI: 7
Article (Journal Article) | Scientific[33549439] [Admin approved]
All citations+mentions: 9, External citations: 2, Self citations: 7, Unhandled citations: 0
  1. * Kustár Ágnes et al. Bronzkori nő szobrászi arcrekonstrukciója Balatonkeresztúr-Réti-dűlő lelőhelyről. (2022) ANTHROPOLOGIAI KÖZLEMÉNYEK 0003-5440 63 3-16
  2. * Dicső Zoltán et al. Genomic refugium of pre-domestication lineages in the Bronze Age Carpathian Basin. (2023)
  3. * Borbély Noémi et al. High Coverage Mitogenomes and Y-Chromosomal Typing Reveal Ancient Lineages in the Modern-Day Székely Population in Romania. (2023) GENES 2073-4425 2073-4425 14 1
  4. * Noémi Borbély et al. Phylogenetic study of the Hungarian-speaking Baranja (Croatia) and Zobor region (Slovakia) populations: preprint. (2023)
  5. DUNNE JULIE et al. The Milky Way: Mobility and Economy at the Turn of the 3rd Millennium in Southern Central Europe. (2023) PROCEEDINGS OF THE PREHISTORIC SOCIETY 0079-497X 89 23-50
  6. * Bondár M. The Paradigm Shift in the Later Fourth Millennium BC: Why did Life Change in the Middle Copper Age in the Heartland of the Carpathian Basin?. (2023) ACTA ARCHAEOLOGICA ACADEMIAE SCIENTIARUM HUNGARICAE 0001-5210 1588-2551 74 1 1-21
  7. * Szeifert Bea et al. Tracing genetic connections of ancient Hungarians to the 6th-14th century populations of the Volga-Ural region (vol 31, pg 3266, 2022). (2023) HUMAN MOLECULAR GENETICS 0964-6906 1460-2083 32 12 2118-2118
  8. * Borbély Noémi et al. Entwined Origins: Paternal and Maternal Genetic Legacies of Hungarian-Speaking Enclaves in the Carpathian Basin. (2024) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  9. Melis Eszter. Northwest Transdanubia from the end of the Early Bronze Age until the Koszider Period: Reworked and extended PhD thesis abstract. (2024) DISSERTATIONES ARCHAEOLOGICAE 2064-4574 Ser. 3 11 667-700
4.
THERAPEUTIC ADVANCES IN GASTROENTEROLOGY 16 Paper: 17562848231174298 , 13 p. (2023)
Locked Publication:34014839 Admin approved Core Citing Journal Article (Article ) Scientific
Citing papers: 1 | Independent citation: 1 | Self citation: 0 | Unknown citation: 0 | Number of citations in Scopus: 1 | WoS/Scopus assigned: 1 | Number of citations with DOI: 1
Article (Journal Article) | Scientific[34014839] [Admin approved]
All citations+mentions: 1, External citations: 1, Self citations: 0, Unhandled citations: 0
  1. Gomes N. et al. Uncovering the effects of Giardia duodenalis on the balance of DNA viruses and bacteria in children's gut microbiota. (2023) ACTA TROPICA 0001-706X 1873-6254 247
5.
NATURE COMMUNICATIONS 14 : 1 Paper: 5278 , 18 p. (2023)
Locked Publication:34119363 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 4 | Independent citation: 3 | Self citation: 1 | Unknown citation: 0 | Number of citations in WoS: 1 | Number of citations in Scopus: 1 | WoS/Scopus assigned: 1 | Number of citations with DOI: 2
Article (Journal Article) | Scientific[34119363] [Validated]
All citations+mentions: 4, External citations: 3, Self citations: 1, Unhandled citations: 0
  1. * Sturm Ádám et al. N6-Methyladenine Progressively Accumulates in Mitochondrial DNA during Aging. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 19
  2. Koch Zane et al. Somatic mutation as an explanation for epigenetic aging. (2023)
  3. Meng Wei-Ying et al. Epigenetic marks or not? The discovery of novel DNA modifications in eukaryotes. (2024) JOURNAL OF BIOLOGICAL CHEMISTRY 0021-9258 1083-351X
  4. Tsai Yi-Ting et al. Expression of Most Retrotransposons in Human Blood Correlates with Biological Aging. (2024)
6.
VIRUS EVOLUTION 8 : 2 Paper: veac069 , 12 p. (2022)
Publication:33040340 Published Core Citing Journal Article (Article ) Scientific
Citing papers: 4 | Independent citation: 1 | Self citation: 3 | Unknown citation: 0 | Number of citations in WoS: 1 | Number of citations in Scopus: 1 | WoS/Scopus assigned: 1 | Number of citations with DOI: 2
Article (Journal Article) | Scientific[33040340] [Approved]
All citations+mentions: 4, External citations: 1, Self citations: 3, Unhandled citations: 0
  1. Dennler Olivier. [Characterization in functional modules of ADAMTS-TSL proteins, by phylogeny approaches]. (2022)
  2. * Sayyar Golsa et al. Epidemic Patterns of Emerging Variants with Dynamical Social Distancing. (2023) In: Trends in Biomathematics: Modeling Epidemiological, Neuronal, and Social Dynamics pp. 215-232
  3. * Zeghbib S. et al. The importance of equally accessible genomic surveillance in the age of pandemics. (2023) BIOLOGIA FUTURA 2676-8615 2676-8607 74 1-2 81-89
  4. * Lanszki Zsófia. Advancing canine distemper virus research through Nanopore Technology for surveillance and genome sequencing. (2024)
7.
Csabai, Luca ; Fazekas, Dávid* ; Kadlecsik, Tamás* ; Szalay-Bekő, Máté ; Bohár, Balázs ; Madgwick, Matthew ; Módos, Dezső ; Ölbei, Márton ; Gul, Lejla ; Sudhakar, Padhmanand et al.
NUCLEIC ACIDS RESEARCH 50 : D1 pp. 701-709. , 9 p. (2022)
Publication:32352175 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 18 | Independent citation: 16 | Self citation: 2 | Unknown citation: 0 | Number of citations in WoS: 12 | Number of citations in Scopus: 13 | WoS/Scopus assigned: 13 | Number of citations with DOI: 14
Article (Journal Article) | Scientific[32352175] [Validated]
All citations+mentions: 18, External citations: 16, Self citations: 2, Unhandled citations: 0
  1. Borgthor Petursson. Analysis of the Understudied Parts of the Phospho- Signalome Using Machine Learning Methods. (2021)
  2. Menestrina Luca et al. An unsupervised computational pipeline identifies potential repurposable drugs to treat Huntington's disease and multiple sclerosis. (2022) Artificial Intelligence in the Life Sciences 2667-3185 2
  3. * Gul Lejla. Bioinformatic pipelines to reconstruct and analyse intercellular and hostmicrobe interactions affecting epithelial signalling pathways. (2022)
  4. Collin Catherine Bjerre et al. Computational Models for Clinical Applications in Personalized Medicine-Guidelines and Recommendations for Data Integration and Model Validation. (2022) JOURNAL OF PERSONALIZED MEDICINE 2075-4426 12 2
  5. Hosseini-Gerami Layla. Using biological and chemical information to improve understanding of drug mechanism of action on the systems-level. (2022)
  6. Iannuccelli Marta et al. Curation of causal interactions mediated by genes associated with autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental disorders. (2023) MOLECULAR PSYCHIATRY 1359-4184 1476-5578
  7. Palshikar Mukta G.. Executable Models of Signaling Pathways Built Using Omics Data. (2023)
  8. Flobak Åsmund et al. Fine tuning a logical model of cancer cells to predict drug synergies: combining manual curation and automated parameterization. (2023) Frontiers in Systems Biology 2674-0702 3
  9. Kumar Shivam et al. konnect2prot: a web application to explore the protein properties in a functional protein–protein interaction network. (2023) BIOINFORMATICS 1367-4803 1460-2059 39 1
  10. Hosseini-Gerami L. et al. MAVEN: compound mechanism of action analysis and visualisation using transcriptomics and compound structure data in R/Shiny. (2023) BMC BIOINFORMATICS 1471-2105 1471-2105 24 1
  11. Misetic Hrvoje et al. Mechanistic insights into the interactions between cancer drivers and the tumour immune microenvironment. (2023) GENOME MEDICINE 1756-994X 1756-994X 15 1
  12. Pandey A.K. et al. Network medicine: an approach to complex kidney disease phenotypes. (2023) NATURE REVIEWS NEPHROLOGY 1759-5061 1759-507X 19 463-475
  13. Lo Surdo Prisca et al. SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update. (2023) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 51 D1 D631-D637
  14. Jaskiewicz Katarzyna et al. The Impaired Wound Healing Process Is a Major Factor in Remodeling of the Corneal Epithelium in Adult and Adolescent Patients With Keratoconus. (2023) INVESTIGATIVE OPHTHALMOLOGY AND VISUAL SCIENCE 0146-0404 1552-5783 64 2
  15. Musilova Jana et al. Augusta: From RNA-Seq to Gene Regulatory Networks and Boolean Models. (2024) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 2001-0370 2001-0370 23 783-790
  16. * Csabai Luca et al. AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation. (2024) AUTOPHAGY 1554-8627 1554-8635 20 1 188-201
  17. Martini Leonardo et al. Detecting and dissecting signaling crosstalk via the multilayer network integration of signaling and regulatory interactions. (2024) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 52 1
  18. Song Junrong et al. Privacy-Preserving Identification of Cancer Subtype-Specific Driver Genes Based on Multigenomics Data with Privatedriver. (2024) JOURNAL OF COMPUTATIONAL BIOLOGY 1066-5277 1557-8666 31 2 99-116
8.
DATABASE-JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2022 Paper: baac083 (2022)
Publication:33101945 Admin approved Core Journal Article (Article ) Scientific
Citing papers: 30 | Independent citation: 29 | Self citation: 1 | Unknown citation: 0 | Number of citations in WoS: 16 | Number of citations in Scopus: 19 | WoS/Scopus assigned: 20 | Number of citations with DOI: 23
Article (Journal Article) | Scientific[33101945] [Admin approved]
All citations+mentions: 30, External citations: 29, Self citations: 1, Unhandled citations: 0
  1. Nersisyan Stepan et al. ECM–Receptor Regulatory Network and Its Prognostic Role in Colorectal Cancer. (2021) FRONTIERS IN GENETICS 1664-8021 12
  2. Chrysinas Panagiotis et al. Cell and tissue-specific glycosylation pathways and transcriptional regulation informed by single-cell transcriptomics. (2023)
  3. Ranjan Kishu et al. Cellular Dynamics of Fadd in the Regulation of Cancer and Inflammatory Diseases. (2023) PREPRINTS 2310-287X 0
  4. Takayama Y. et al. Deciphering the Molecular Mechanisms of Autonomic Nervous System Neuron Induction through Integrative Bioinformatics Analysis. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 10
  5. Chen Winston et al. DeepROCK: Error-controlled interaction detection in deep neural networks. (2023)
  6. Tooley K.B. et al. Differential usage of DNA modifications in neurons, astrocytes, and microglia. (2023) EPIGENETICS & CHROMATIN 1756-8935 1756-8935 16 1
  7. Wu Yang-Han et al. Knowledge graph embedding for profiling the interaction between transcription factors and their target genes. (2023) PLOS COMPUTATIONAL BIOLOGY 1553-734X 1553-7358 19 6 p. e1011207
  8. Yoon Jun Ho et al. Learning gene networks under SNP perturbation using SNP and allele-specific expression data. (2023)
  9. Siddiqui T. et al. Nerve growth factor receptor (Ngfr) induces neurogenic plasticity by suppressing reactive astroglial Lcn2/Slc22a17 signaling in Alzheimer’s disease. (2023) NPJ REGENERATIVE MEDICINE 2057-3995 8 1
  10. Ezeriņa D. et al. Peroxiredoxin-1 is an H2O2 safe-guard antioxidant and signalling enzyme in M1 macrophages. (2023) ADVANCES IN REDOX RESEARCH 2667-1379 9
  11. Mandal Sudip. Reverse Engineering of Regulatory Networks. (2023) ISBN:9781071634615
  12. Devos H. et al. Reviewing the Regulators of COL1A1. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 12
  13. Indelicato E. et al. Skeletal muscle proteome analysis underpins multifaceted mitochondrial dysfunction in Friedreich’s ataxia. (2023) FRONTIERS IN NEUROSCIENCE 1662-4548 1662-453X 17
  14. Holguín Jorge Andrés. Widespread alteration of protein autoinhibition in human cancers. (2023)
  15. * Csabai Luca et al. AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation. (2024) AUTOPHAGY 1554-8627 1554-8635 20 1 188-201
  16. Ranjan Kishu et al. Cellular Dynamics of Fas-Associated Death Domain in the Regulation of Cancer and Inflammation. (2024) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 25 6 p. 3228
  17. Muley V.Y.. Deep Learning for Predicting Gene Regulatory Networks: A Step-by-Step Protocol in R. (2024) METHODS IN MOLECULAR BIOLOGY 1064-3745 1940-6029 2719 265-294
  18. Henze Henriette et al. Denervation alters the secretome of myofibers and thereby affects muscle stem cell lineage progression and functionality. (2024) NPJ REGENERATIVE MEDICINE 2057-3995 9 1
  19. Takahashi Fumiya et al. Development of sexual dimorphism of skeletal muscles through the adrenal cortex, caused by androgen-induced global gene suppression. (2024) CELL REPORTS 2211-1247 2211-1247 43 2 p. 113715
  20. Huyghebaert J. et al. Identification of a DLG3 stop mutation in the MRX20 family. (2024) EUROPEAN JOURNAL OF HUMAN GENETICS 1018-4813 1476-5438
  21. Duangjan Chatrawee et al. Loss of WDR23 proteostasis impacts mitochondrial homeostasis in the mouse brain. (2024) CELLULAR SIGNALLING 0898-6568 1873-3913 116
  22. Florio Angela et al. Monolayer culture alters EGFR inhibitor response through abrogation of microRNA-mediated feedback regulation. (2024) SCIENTIFIC REPORTS 2045-2322 2045-2322 14 1
  23. Aguerralde-Martin Maider et al. MORE interpretable multi-omic regulatory networks to characterize phenotypes. (2024)
  24. Ma Ke et al. PPRTGI: A Personalized PageRank Graph Neural Network for TF-target Gene Interaction Detection. (2024) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1545-5963 1557-9964 1-12
  25. Barvaux Sybille et al. SinCMat: A single-cell-based method for predicting functional maturation transcription factors. (2024) STEM CELL REPORTS 2213-6711 2213-6711 -
  26. Gasperoni Jemma G. et al. The Role of PLAG1 in Mouse Brain Development and Neurogenesis. (2024) MOLECULAR NEUROBIOLOGY 0893-7648 1559-1182
  27. Kiontke Karin et al. Tissue-specific RNA-seq defines genes governing male tail tip morphogenesis in C. elegans. (2024)
  28. Afonso J. et al. Transcription factors and miRNA act as contrary regulators of gene expression in the testis and epididymis of Bos indicus animals. (2024) GENE 0378-1119 1879-0038 899
  29. Liu Jiahui et al. WDR23 mediates NRF2 proteostasis and cytoprotective capacity in the hippocampus. (2024) MECHANISMS OF AGEING AND DEVELOPMENT 0047-6374 1872-6216 218
  30. Holguin-Cruz Jorge A. et al. Widespread alteration of protein autoinhibition in human cancers. (2024) CELL SYSTEMS 2405-4712 2405-4720
9.
Abstract (Conference paper) | Scientific[32681011] [Approved]
10.
Magyar Infektológiai és Klinikai Mikrobiológiai Társaság 48. Kongresszusa 2021-09-30 [Debrecen, Magyarország], (ELŐADÁS),
Publication:32476999 Published Core Miscellaneous (Not classified ) Scientific
Not classified (Miscellaneous) | Scientific[32476999] [Approved]
11.
PHARMACEUTICALS 13 : 11 Paper: 346 , 16 p. (2020)
Locked Publication:31647953 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 16 | Independent citation: 15 | Self citation: 1 | Unknown citation: 0 | Number of citations in WoS: 13 | Number of citations in Scopus: 12 | WoS/Scopus assigned: 13 | Number of citations with DOI: 15
Article (Journal Article) | Scientific[31647953] [Validated]
All citations+mentions: 16, External citations: 15, Self citations: 1, Unhandled citations: 0
  1. Cojkic A. et al. Identification of bull semen microbiome by 16s sequencing and possible relationships with fertility. (2021) MICROORGANISMS 2076-2607 2076-2607 9 12
  2. Cai B. et al. Oyster polysaccharides ameliorate intestinal mucositis and improve metabolism in 5-fluorouracil-treated S180 tumour-bearing mice. (2021) CARBOHYDRATE POLYMERS 0144-8617 1879-1344 256
  3. Sheng K. et al. Probiotic Bacillus cereus Alleviates Dextran Sulfate Sodium-Induced Colitis in Mice through Improvement of the Intestinal Barrier Function, Anti-Inflammation, and Gut Microbiota Modulation. (2021) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 0021-8561 1520-5118 69 49 14810-14823
  4. Akiyama S. et al. Diagnostic and Management Considerations for the IPAA With Crohn's Disease-Like Features. (2022) DISEASES OF THE COLON & RECTUM 0012-3706 1530-0358 65 Suppl. 1 S77-S84
  5. Zhang Qing et al. Kappaphycus Alvarezii Compound Powder Prevents Chemotherapy-Induced Intestinal Mucositis in BALB/c Mice. (2022) NUTRITION AND CANCER : AN INTERNATIONAL JOURNAL 0163-5581 1532-7914 74 10 3735-3746
  6. Molina-Vega M. et al. Metformin action over gut microbiota is related to weight and glycemic control in gestational diabetes mellitus: A randomized trial. (2022) BIOMEDICINE & PHARMACOTHERAPY 0753-3322 1950-6007 145
  7. Le-Trilling V.T.K. et al. Acute cytomegalovirus infection modulates the intestinal microbiota and targets intestinal epithelial cells. (2023) EUROPEAN JOURNAL OF IMMUNOLOGY 0014-2980 1521-4141 53 2
  8. Flores Erika. A larval zebrafish (Danio rerio) model of adherent-invasive Escherichia coli infections. (2023)
  9. Yang Jhih-Yi et al. Ameliorative effect of buckwheat polysaccharides on colitis via regulation of the gut microbiota.. (2023) INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 0141-8130 1879-0003 227 872-883
  10. Yin H. et al. Differences in Gut Microbiota between Healthy Individuals and Patients with Perianal Abscess before and after Surgery. (2023) MEDIATORS OF INFLAMMATION 0962-9351 1466-1861 2023
  11. * Péter Bacsur et al. Effects of bowel cleansing on the composition of the gut microbiota in inflammatory bowel disease patients and healthy controls. (2023) THERAPEUTIC ADVANCES IN GASTROENTEROLOGY 1756-283X 1756-2848 16
  12. Kousgaard Sabrina Just. Faecal Microbiota Transplantation for Treatment of Chronic Pouchitis: Role of Gut Microbiota in Disease Mechanism and Treatment of Pouchitis. (2023)
  13. Filidou Eirini et al. Special Issue “Gut Microbiota, Inflammatory Bowel Diseases, and Therapeutic Targets”. (2023) PHARMACEUTICALS 1424-8247 16 5
  14. Hezhai Y. I. et al. Analysis of the difference of intestinal flora between patients with perianal abscess before and after surgery and healthy people. (2024) Chinese Journal of General Practice 1674-4152 22 1 59-63
  15. Dahl Sham Al-Mashadi et al. Diverticular disease and risk of dementia: a Danish population-based cohort study. (2024) JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY 0815-9319 1440-1746
  16. Erganis Sidre et al. Pathogen prevalence in IBD and non-IBD patients using multiplex PCR stool test. (2024) ANNALS OF CLINICAL AND ANALYTICAL MEDICINE 2667-663X 15 1 66-70
12.
Kintses, B. ✉ ; Jangir, P.K.* ; Fekete, G.* ; Számel, M. ; Méhi, O. ; Spohn, R. ; Daruka, L. ; Martins, A. ; Hosseinnia, A. ; Gagarinova, A. et al.
NATURE COMMUNICATIONS 10 : 1 Paper: 5731 (2019)
Locked Publication:31038930 Published Core Citing Journal Article (Article ) Scientific
Citing papers: 34 | Independent citation: 29 | Self citation: 5 | Unknown citation: 0 | Number of citations in WoS: 26 | Number of citations in Scopus: 26 | WoS/Scopus assigned: 28 | Number of citations with DOI: 28
Article (Journal Article) | Scientific[31038930] [Approved]
All citations+mentions: 34, External citations: 29, Self citations: 5, Unhandled citations: 0
  1. * Spohn Reka et al. Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance. (2019) NATURE COMMUNICATIONS 2041-1723 2041-1723 10
  2. * Csoergo Balint et al. A compact Cascade-Cas3 system for targeted genome engineering. (2020) NATURE METHODS 1548-7091 1548-7105 17 12 p. 1183+
  3. Hernando-Amado S. et al. Antibiotic Resistance: Moving From Individual Health Norms to Social Norms in One Health and Global Health. (2020) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 11
  4. El-Shazely Baydaa Mohamed. Antimicrobial peptide resistance: infection dynamics, cross-sensitivity to insect immune effectors, and evolution of pharmacodynamics. (2020)
  5. Trivedi Vikas D. et al. Charged Gram-positive species sequester and decrease the potency of pediocin PA-1 in mixed microbial settings. (2020)
  6. Correia Annapaula et al. Protein antibiotics: mind your language. (2020) NATURE REVIEWS MICROBIOLOGY 1740-1526 1740-1534 19 1 p. 7
  7. Ting D.S.J. et al. Strategies in Translating the Therapeutic Potentials of Host Defense Peptides. (2020) FRONTIERS IN IMMUNOLOGY 1664-3224 1664-3224 11
  8. Dong M. et al. BING, a novel antimicrobial peptide isolated from Japanese medaka plasma, targets bacterial envelope stress response by suppressing cpxR expression. (2021) SCIENTIFIC REPORTS 2045-2322 2045-2322 11 1
  9. * Jangir Pramod K. et al. Evolutionary constraints on the acquisition of antimicrobial peptide resistance in bacterial pathogens. (2021) TRENDS IN MICROBIOLOGY 0966-842X 1878-4380 29 12 1058-1061
  10. Gagarinova A. et al. Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks. (2021) METHODS IN MOLECULAR BIOLOGY 1064-3745 1940-6029 2381 3-37
  11. Liu J. et al. Rational Design of Dipicolylamine-Containing Carbazole Amphiphiles Combined with Zn2+as Potent Broad-Spectrum Antibacterial Agents with a Membrane-Disruptive Mechanism. (2021) JOURNAL OF MEDICINAL CHEMISTRY 0022-2623 1520-4804 64 14 10429-10444
  12. Zimmermann M. et al. Towards a mechanistic understanding of reciprocal drug–microbiome interactions. (2021) MOLECULAR SYSTEMS BIOLOGY 1744-4292 1744-4292 17 3
  13. Heger Thomas. Viola odorata L.: Identification and Characterization of Na+,K+-ATPase Inhibiting Component. (2021)
  14. Rodríguez-Rojas A. et al. Antimicrobial peptides - Inspiration from nature. (2022) BIOSPEKTRUM 0947-0867 1868-6249 28 2 135-137
  15. Ting Darren Shu. Current and Emerging Therapies for Corneal Infection: A Clinical and Laboratory Study. (2022)
  16. Shi G. et al. DRAMP 3.0: An enhanced comprehensive data repository of antimicrobial peptides. (2022) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 50 D1 D488-D496
  17. Wang Xueying et al. Effect of Microencapsulation Techniques on the Stress Resistance and Biological Activity of Bovine Lactoferricin-Lactoferrampin-Encoding Lactobacillus reuteri. (2022) FOODS 2304-8158 2304-8158 11 20
  18. * Jangir Pramod K et al. Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of resistance to a last-resort antibiotic. (2022) ELIFE 2050-084X 2050-084X 11
  19. Ferguson P.M. et al. Temporin B Forms Hetero-Oligomers with Temporin L, Modifies Its Membrane Activity, and Increases the Cooperativity of Its Antibacterial Pharmacodynamic Profile. (2022) BIOCHEMISTRY 0006-2960 1520-4995 61 11 1029-1040
  20. Georgieva Maria et al. The EnvZ/OmpR Two-Component System Regulates the Antimicrobial Activity of TAT-RasGAP(317-326) and the Collateral Sensitivity to Other Antibacterial Agents. (2022) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 10 3
  21. Boltsis Ilias et al. The genomic dimension in biodefense: Decontamination. (2022) In: Genomics in Biosecurity pp. 197-218
  22. Fodor András et al. Type Strains of Entomopathogenic Nematode-Symbiotic Bacterium Species, Xenorhabdus szentirmaii (EMC) and X. budapestensis (EMA), Are Exceptional Sources of Non-Ribosomal Templated, Large-Target-Spectral, Thermotolerant-Antimicrobial Peptides (by Both), and Iodinin (by EMC). (2022) PATHOGENS 2076-0817 11 3
  23. Anurag Anand A. et al. A comprehensive guide on screening and selection of a suitable AMP against biofilm-forming bacteria. (2023) CRITICAL REVIEWS IN MICROBIOLOGY 1040-841X 1549-7828
  24. Fodor András et al. Antimicrobial Peptides (AMP) in the Cell-Free Culture Media of Xenorhabdus budapestensis and X. szentirmaii Exert Anti-Protist Activity against Eukaryotic Vertebrate Pathogens including Histomonas meleagridis and Leishmania donovani Species. (2023) ANTIBIOTICS 2079-6382 12 9
  25. Li Ting et al. Bacterial resistance to antibacterial agents: Mechanisms, control strategies, and implications for global health. (2023) SCIENCE OF THE TOTAL ENVIRONMENT 0048-9697 1879-1026 860
  26. Javed Ali et al. Effects of Escherichia coli LPS Structure on Antibacterial and Anti-Endotoxin Activities of Host Defense Peptides. (2023) PHARMACEUTICALS 1424-8247 16 10 p. 1485
  27. Liu Yiping et al. Evolutionary Multi-Objective Optimization in Searching for Various Antimicrobial Peptides [Feature]. (2023) IEEE COMPUTATIONAL INTELLIGENCE MAGAZINE 1556-603X 1556-6048 18 2 31-45
  28. Phuong Hai Bui et al. Impact of chemical modifications on the antimicrobial and hemolytic activity of helical amphipathic peptide Lasioglossin LL-III. (2023) AMINO ACIDS 0939-4451 1438-2199 55 1531-1544
  29. * Jangir Pramod K et al. The evolution of colistin resistance increases bacterial resistance to host antimicrobial peptides and virulence. (2023) ELIFE 2050-084X 2050-084X 12
  30. Fodor András et al. XENOFOOD—An Autoclaved Feed Supplement Containing Autoclavable Antimicrobial Peptides—Exerts Anticoccidial GI Activity, and Causes Bursa Enlargement, but Has No Detectable Harmful Effects in Broiler Cockerels despite In Vitro Detectable Cytotoxicity on LHM Cells. (2023) PATHOGENS 2076-0817 12 3
  31. Wei Ying et al. Injectable hydrogels doped with PDA nanoparticles for photothermal bacterial inhibition and rapid wound healing in vitro. (2024) RSC ADVANCES 2046-2069 2046-2069 14 4 2778-2791
  32. Li Chenkai. Machine learning for antimicrobial peptide discovery and design. (2024)
  33. Salinas-Restrepo Cristian et al. Short Antimicrobial Peptide Derived from the Venom Gland Transcriptome of Pamphobeteus verdolaga Increases Gentamicin Susceptibility of Multidrug-Resistant Klebsiella pneumoniae. (2024) ANTIBIOTICS 2079-6382 13 1
  34. Sakenova Nazgul et al. Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics. (2024)
13.
NATURE MICROBIOLOGY 4 : 3 pp. 447-458. , 12 p. (2019)
Locked Publication:30435652 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 73 | Independent citation: 69 | Self citation: 4 | Unknown citation: 0 | Number of citations in WoS: 59 | Number of citations in Scopus: 54 | WoS/Scopus assigned: 62 | Number of citations with DOI: 66
Article (Journal Article) | Scientific[30435652] [Validated]
All citations+mentions: 73, External citations: 69, Self citations: 4, Unhandled citations: 0
  1. Zhang Sheng et al. Facing a new challenge: the adverse effects of antibiotics on gut microbiota and host immunity. (2019) CHINESE MEDICAL JOURNAL 0366-6999 2542-5641 132 10 1135-1138
  2. * Spohn Reka et al. Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance. (2019) NATURE COMMUNICATIONS 2041-1723 2041-1723 10
  3. Boto Luis et al. Potential impacts of horizontal gene transfer on human health and physiology and how anthropogenic activity can affect it. (2019) FEBS JOURNAL 1742-464X 1742-4658 286 20 3959-3967
  4. Cyriaque Valentine et al. Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments. (2019) JOURNAL OF HAZARDOUS MATERIALS 0304-3894 1873-3336 382
  5. Socha Raymond D. et al. The Molecular Mechanisms Underlying Hidden Phenotypic Variation among Metallo-beta-Lactamases. (2019) JOURNAL OF MOLECULAR BIOLOGY 0022-2836 1089-8638 431 6 1172-1185
  6. Mookherjee Neeloffer et al. Antimicrobial host defence peptides: functions and clinical potential. (2020) NATURE REVIEWS DRUG DISCOVERY 1474-1776 1474-1784 19 5 311-332
  7. Lazzaro Brian P. et al. Antimicrobial peptides: Application informed by evolution. (2020) SCIENCE 0036-8075 1095-9203 368 6490 487-48+
  8. Telhig S. et al. Bacteriocins to Thwart Bacterial Resistance in Gram Negative Bacteria. (2020) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 11
  9. Trivedi Vikas D. et al. Charged Gram-positive species sequester and decrease the potency of pediocin PA-1 in mixed microbial settings. (2020)
  10. Wu R. et al. Effect of Chondroitin Sulfate from Sturgeon on Intestinal Flora of Mice with Colorectal Cancer. (2020) SHIPIN KEXUE / FOOD SCIENCE 1002-6630 41 15 216-223
  11. * Bálint Anita et al. Functional Anatomical Changes in Ulcerative Colitis Patients Determine Their Gut Microbiota Composition and Consequently the Possible Treatment Outcome. (2020) PHARMACEUTICALS 1424-8247 13 11
  12. Lee Kihyun et al. Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. (2020) MICROBIOME 2049-2618 2049-2618 8 1
  13. Fodor András et al. Multidrug Resistance (MDR) and Collateral Sensitivity in Bacteria, with Special Attention to Genetic and Evolutionary Aspects and to the Perspectives of Antimicrobial Peptides—A Review. (2020) PATHOGENS 2076-0817 9 7
  14. Pietsch F. et al. Selection of resistance by antimicrobial coatings in the healthcare setting. (2020) JOURNAL OF HOSPITAL INFECTION 0195-6701 1532-2939 106 1 115-125
  15. Anthony Winston E et al. The Gut Microbiome as a Reservoir for Antimicrobial Resistance. (2020) JOURNAL OF INFECTIOUS DISEASES 0022-1899 1537-6613 223 SI 3 p. S209-S213
  16. Li Xing-Ping et al. Within-host heterogeneity and flexibility of mcr-1 transmission in chicken gut. (2020) INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS 0924-8579 1872-7913 55 1
  17. Lawrence Travis J. et al. amPEPpy 1.0: a portable and accurate antimicrobial peptide prediction tool. (2021) BIOINFORMATICS 1367-4803 1460-2059 37 14 2058-2060
  18. Ramos-Martín F. et al. Antimicrobial peptide k11 selectively recognizes bacterial biomimetic membranes and acts by twisting their bilayers. (2021) PHARMACEUTICALS 1424-8247 14 1
  19. de la Rosa et al. Antioxidant molecules as a source of mitigation of antibiotic resistance gene dissemination. (2021) ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 0066-4804 1098-6596 65 6
  20. Lin H. et al. Effect of composting on the conjugative transmission of sulfonamide resistance and sulfonamide-resistant bacterial population. (2021) JOURNAL OF CLEANER PRODUCTION 0959-6526 1879-1786 285
  21. * Jangir Pramod K. et al. Evolutionary constraints on the acquisition of antimicrobial peptide resistance in bacterial pathogens. (2021) TRENDS IN MICROBIOLOGY 0966-842X 1878-4380 29 12 1058-1061
  22. Brito Ilana Lauren. Examining horizontal gene transfer in microbial communities. (2021) NATURE REVIEWS MICROBIOLOGY 1740-1526 1740-1534 19 7 442-453
  23. Feng W. et al. Gut microbiota as a target to limit toxic effects of traditional Chinese medicine: Implications for therapy. (2021) BIOMEDICINE & PHARMACOTHERAPY 0753-3322 1950-6007 133
  24. Balhuizen Melanie D. Interplay between Outer Membrane Vesicles and Host Defense Peptides. (2021)
  25. Wu G. et al. Investigating the mechanism of action of aggregation-inducing antimicrobial Pept-ins. (2021) CELL CHEMICAL BIOLOGY 2451-9456 2451-9448 1074-5521 28 4 524-536
  26. Roodgar M. et al. Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment. (2021) GENOME RESEARCH 1088-9051 1549-5469 31 8 1433-1446
  27. Gayathri K. Veena et al. Metabolic and molecular modelling of zebrafish gut biome to unravel antimicrobial peptides through metagenomics. (2021) MICROBIAL PATHOGENESIS 0882-4010 1096-1208 154
  28. Crofts Terence S. et al. Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries. (2021) MSYSTEMS 2379-5077 2379-5077 6 3 p. e00524-21
  29. Igler C. et al. Multi-step vs. single-step resistance evolution under different drugs, pharmacokinetics, and treatment regimens. (2021) ELIFE 2050-084X 2050-084X 10 p. 2020.10.19.344960
  30. Anthony Eric Tobechukwu et al. Potentials of low-cost methods for the removal of antibiotic-resistant bacteria and their genes in low budget communities: A review. (2021) JOURNAL OF WATER PROCESSING ENGINEERING 2214-7144 2214-7144 40
  31. Wang Anlu et al. [Research progress of bacterial flora microecology in the prevention and control of multidrug-resistant bacteria in ICU]. (2021) Chinese Journal of Critical Care Medicine(Electronic Edition) 1674-6880 14 4 323-326
  32. Fang Ding-li et al. [Research progress on the effect of antibiotics on intestinal colonization resistance]. (2021) CHINESE JOURNAL OF ANTIBIOTICS 1001-8689 46 2 113-120
  33. Dhariwal Achal et al. ResistoXplorer: a web-based tool for visual, statistical and exploratory data analysis of resistome data. (2021) NAR GENOMICS AND BIOINFORMATICS 2631-9268 3 1
  34. Serek P. et al. The effect of bacterial infections, probiotics and zonulin on intestinal barrier integrity. (2021) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 22 21
  35. He T. et al. The gut microbial diversity of colon cancer patients and the clinical significance. (2021) BIOENGINEERED 2165-5979 2165-5987 12 1 7046-7060
  36. Ramos-Martín F. et al. Bombyx mori Cecropin D could trigger cancer cell apoptosis by interacting with mitochondrial cardiolipin. (2022) BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 0005-2736 1879-2642 1864 10
  37. Maidment Toby. Characterisation of the pouch microbiome and association with reproductive outcomes in the koala (Phascolartos cinereus). (2022)
  38. Woo Connie W. et al. Commensal gut microbiota-based strategies for oral delivery of therapeutic proteins. (2022) TRENDS IN PHARMACOLOGICAL SCIENCES 0165-6147 1873-3735 43 12 1004-1013
  39. Yoshino N. et al. Dual Inhibitory Activity of Petroselinic Acid Enriched in Fennel Against Porphyromonas gingivalis. (2022) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 13
  40. Telhig Soufiane. Étude du potentiel des microcines comme alternative aux antibiotiques en santé animal : approche phénotypique, génomique et métabolomique. (2022)
  41. Ma Yue et al. Identification of antimicrobial peptides from the human gut microbiome using deep learning. (2022) NATURE BIOTECHNOLOGY 1087-0156 1546-1696 -
  42. Mehtani D. et al. Immunological paradox for maintaining normal flora: it is all by design, not by chance. (2022) In: Microbial Crosstalk with Immune System: New Insights in Therapeutics pp. 39-73
  43. Escobar-Salom M. et al. Mammals' humoral immune proteins and peptides targeting the bacterial envelope: from natural protection to therapeutic applications against multidrug-resistant Gram-negatives. (2022) BIOLOGICAL REVIEWS 1464-7931 1469-185X 97 3 1005-1037
  44. Ramos-Martín F. et al. Molecular basis of the anticancer, apoptotic and antibacterial activities of Bombyx mori Cecropin A. (2022) ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 0003-9861 1096-0384 715
  45. Zhao L. et al. Molecular dynamics simulations to study the role of biphenylalanine in promoting the antibacterial activity of ultrashort peptides. (2022) JOURNAL OF MOLECULAR GRAPHICS AND MODELLING 1093-3263 1873-4243 117
  46. Huy Xuan Luong et al. Multiple roles of ribosomal antimicrobial peptides in tackling global antimicrobial resistance. (2022) ROYAL SOCIETY OPEN SCIENCE 2054-5703 2054-5703 9 1
  47. Yu Zhigang et al. Non-caloric artificial sweeteners modulate conjugative transfer of multi-drug resistance plasmid in the gut microbiota. (2022) GUT MICROBES 1949-0976 1949-0984 15 1 p. 2157698
  48. Blair Jessica M et al. The role of bacterial transport systems in the removal of host antimicrobial peptides in Gram-negative bacteria. (2022) FEMS MICROBIOLOGY REVIEWS 0168-6445 1574-6976 June
  49. Fodor András et al. Type Strains of Entomopathogenic Nematode-Symbiotic Bacterium Species, Xenorhabdus szentirmaii (EMC) and X. budapestensis (EMA), Are Exceptional Sources of Non-Ribosomal Templated, Large-Target-Spectral, Thermotolerant-Antimicrobial Peptides (by Both), and Iodinin (by EMC). (2022) PATHOGENS 2076-0817 11 3
  50. Yu Zhigang. Uncovering roles of artificial sweeteners in the spread of antimicrobial resistance amongbacterial taxa. (2022)
  51. Rondinelli Mia Alessia. Variations in carbapenem resistance associated with the Verona integron-encoded metallo-beta-lactamase across the order Enterobacterales. (2022)
  52. * Daruka L et al. Antibiotics of the future are prone to resistance in Gram-negative pathogens. (2023)
  53. Chen C. et al. Antimicrobial peptides as promising antibiotic adjuvants to combat drug-resistant pathogens. (2023) CRITICAL REVIEWS IN MICROBIOLOGY 1040-841X 1549-7828
  54. Chen Bingfeng et al. Antimicrobial Peptides in the Global Microbiome: Biosynthetic Genes and Resistance Determinants. (2023) ENVIRONMENTAL SCIENCE & TECHNOLOGY 0013-936X 1520-5851 57 20 7698-7708
  55. Li Ting et al. Bacterial resistance to antibacterial agents: Mechanisms, control strategies, and implications for global health. (2023) SCIENCE OF THE TOTAL ENVIRONMENT 0048-9697 1879-1026 860
  56. Zou S. et al. Characteristics of tetracycline antibiotic resistance genes in intestinal microorganisms and intestinal environment of Yunnan snub-nosed monkeys. (2023) SHOULEI XUEBAO / ACTA THERIOLOGICA SINICA 1000-1050 43 3 304-314
  57. Lobanov M. Y. et al. Comparison of deep learning models with simple method to assess the problem of antimicrobial peptides prediction. (2023) MOLECULAR INFORMATICS 1868-1743 1868-1751
  58. Chaudhary S. et al. Efficient in planta production of amidated antimicrobial peptides that are active against drug-resistant ESKAPE pathogens. (2023) NATURE COMMUNICATIONS 2041-1723 2041-1723 14 1
  59. Zhang Wentao et al. Fuse feeds as one: cross-modal framework for general identification of AMPs. (2023) BRIEFINGS IN BIOINFORMATICS 1467-5463 1477-4054 24 6
  60. Xu B. et al. Gut-targeted nanoparticles deliver specifically targeted antimicrobial peptides against Clostridium perfringens infections. (2023) SCIENCE ADVANCES 2375-2548 2375-2548 9 39
  61. Xu Bocheng et al. Gut-targeted nanoparticles deliver specifically targeted antimicrobial peptides against Clostridium perfringens infections. (2023) SCIENCE ADVANCES 2375-2548 2375-2548 9 39
  62. Moura de Sousa Jorge et al. Horizontal gene transfer among host-associated microbes. (2023) CELL HOST & MICROBE 1931-3128 1934-6069 31 4 513-527
  63. Liu Fei et al. Host Defense Peptide Piscidin and Yeast-Derived Glycolipid Exhibit Synergistic Antimicrobial Action through Concerted Interactions with Membranes. (2023) JACS AU 2691-3704
  64. Cometta Conde Silvia. Immobilization of antimicrobial agents via physical and chemical modifications on medical-grade polycaprolactone for the prevention of biomaterial-related infections. (2023)
  65. Dvoretckaia A. et al. Polymyxin B Conjugates with Bio-Inspired Synthetic Polymers of Different Nature. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 3
  66. Gschwind Rémi et al. ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics. (2023) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962
  67. Wang Binhao et al. Tackling Soil ARG-Carrying Pathogens with Global-Scale Metagenomics. (2023) ADVANCED SCIENCE 2198-3844
  68. Witzany Christopher et al. The pharmacokinetic–pharmacodynamic modelling framework as a tool to predict drug resistance evolution. (2023) MICROBIOLOGY-SGM 1350-0872 1465-2080 169 7 p. 001368
  69. Zhao Chongyi et al. Analyzing resistome in soil and Human gut: a study on the characterization and risk evaluation of antimicrobial peptide resistance. (2024) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 15
  70. Wang Binhao et al. Global diversity, coexistence and consequences of resistome in inland waters. (2024) WATER RESEARCH 0043-1354 1879-2448
  71. Zhang Qi et al. Glyphosate Disorders Soil Enchytraeid Gut Microbiota and Increases Its Antibiotic Resistance Risk. (2024) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 0021-8561 1520-5118 -
  72. Chai Jianmin et al. Metagenomics reveals the temporal dynamics of the rumen resistome and microbiome in goat kids. (2024) MICROBIOME 2049-2618 2049-2618 12 1
  73. Chen Dongliang et al. Multi-DNA-Modified Double-Network Hydrogel with Customized Microstructure: A Novel System for Living Circulating Tumor Cells Capture and Real-Time Detection. (2024) ACS APPLIED MATERIALS & INTERFACES 1944-8244 1944-8252
14.
Sudhakar, Padhmanand ; Jacomin, Anne-Claire ; Hautefort, Isabelle ; Samavedam, Siva ; Fatemian, Koorosh ; Ari, Eszter ; Gul, Leila ; Demeter, Amanda ; Jones, Emily ; Korcsmaros, Tamas et al.
AUTOPHAGY 15 : 9 pp. 1620-1633. , 14 p. (2019)
Publication:30617455 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 42 | Independent citation: 36 | Self citation: 6 | Unknown citation: 0 | Number of citations in WoS: 31 | Number of citations in Scopus: 31 | WoS/Scopus assigned: 32 | Number of citations with DOI: 38
Article (Journal Article) | Scientific[30617455] [Validated]
All citations+mentions: 42, External citations: 36, Self citations: 6, Unhandled citations: 0
  1. Li Jie et al. eIF2 alpha signaling regulates autophagy of osteoblasts and the development of osteoclasts in OVX mice. (2019) CELL DEATH AND DISEASE 2041-4889 2041-4889 10 12
  2. Xie Chuan et al. H. Pylori Infection Inhibits Autophagy to Aggravate DNA Damage by P62-Mediated Rad51 Ubiquitination. (2019)
  3. Зубова С. Г.. Многоликость аутофагии и ее неоднозначная роль в биологических процессах. (2019) CITOLOGIJA 0041-3771 61 12 941-950
  4. Bozic Mihaela et al. A conserved ATG2-GABARAP family interaction is critical for phagophore formation. (2020) EMBO REPORTS 1469-221X 1469-3178 21 3
  5. * Sudhakar Padhmanand. Assessment of Ecosystem Services and Capabilities of Communities from different Scales and Niches - Implications on Sustainability Goals. (2020) EUROPEAN JOURNAL OF SUSTAINABLE DEVELOPMENT RESEARCH 2468-1962 2542-4742 4 3
  6. * Sudhakar Padhmanand et al. Computational Biology and Machine Learning Approaches to Study Mechanistic Microbiomehost Interactions. (2020) PREPRINTS 2310-287X
  7. Westerhausen Sibel geb.. Development of highly sensitive tools to investigate the Salmonella type III secretion system. (2020)
  8. Fan Shuangqi et al. Dual NDP52 Function in Persistent CSFV Infection. (2020) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 10
  9. Xie Chuan et al. Inhibition of autophagy aggravates DNA damage response and gastric tumorigenesis via Rad51 ubiquitination in response toH. pyloriinfection. (2020) GUT MICROBES 1949-0976 1949-0984 11 6 1567-1589
  10. Thomas David R. et al. Interfering with Autophagy: The Opposing Strategies Deployed by Legionella pneumophila and Coxiella burnetii Effector Proteins. (2020) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 10
  11. * Andrighetti Tahila et al. MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions. (2020) CELLS 2073-4409 9 5
  12. Bowden T.J. et al. Post-translational protein deimination signatures and extracellular vesicles (EVs) in the Atlantic horseshoe crab (Limulus polyphemus). (2020) DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 0145-305X 1879-0089 110
  13. Fan Shuangqi et al. The Role of Autophagy and Autophagy Receptor NDP52 in Microbial Infections. (2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 21 6
  14. Liu Leiling et al. Advances in the role and mechanism of BAG3 in dilated cardiomyopathy. (2021) HEART FAILURE REVIEWS 1382-4147 1573-7322 26 1 183-194
  15. Pirolli Nicholas H. et al. Bacterial Extracellular Vesicles and the Gut‐Microbiota Brain Axis: Emerging Roles in Communication and Potential as Therapeutics. (2021) ADVANCED BIOLOGY 2701-0198 5 7 p. 2000540
  16. * Sudhakar P. et al. Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions. (2021) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 12
  17. Xu Zheng et al. Helicobacter pylori regulates ILK to influence autophagy through Rac1 and RhoA signaling pathways in gastric epithelial cells. (2021) MICROBIAL PATHOGENESIS 0882-4010 1096-1208 158
  18. Zhao W. et al. High pathogenicity island is associated with enhanced autophagy in pathogenic Escherichia coli HPI - infected macrophages. (2021) RESEARCH IN VETERINARY SCIENCE 0034-5288 1532-2661 135 113-120
  19. Han Zhu et al. Model-based analysis uncovers mutations altering autophagy selectivity in human cancer. (2021) NATURE COMMUNICATIONS 2041-1723 2041-1723 12 1
  20. Liu Yang et al. Mycoplasma bovis subverts autophagy to promote intracellular replication in bovine mammary epithelial cells cultured in vitro. (2021) VETERINARY RESEARCH 0928-4249 1297-9716 52 1
  21. Brimson J.M. et al. Plant polyphenols for aging health: Implication from their autophagy modulating properties in age-associated diseases. (2021) PHARMACEUTICALS 1424-8247 14 10
  22. Zhang Wei et al. Rosmarinic acid prevents refractory bacterial pneumonia through regulating Keap1/Nrf2-mediated autophagic pathway and mitochondrial oxidative stress. (2021) FREE RADICAL BIOLOGY AND MEDICINE 0891-5849 1873-4596 168 247-257
  23. Tóth Dávid et al. The interplay between pathogens and Atg8 family proteins: thousand-faced interactions. (2021) FEBS OPEN BIO 2211-5463 2211-5463 11 12 3237-3252
  24. Zheng Q. et al. A dynamically evolving war between autophagy and pathogenic microorganisms. (2022) JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B 1673-1581 1862-1783 23 1 19-41
  25. Zhou Jie et al. Autophagy Protects Ocular Surface Against Overactivated Inflammation by Degrading Retinoic Acid-Induced Gene-I in Human Conjunctival Epithelial Cells. (2022) JOURNAL OF OCULAR PHARMACOLOGY AND THERAPEUTICS 1080-7683 1557-7732
  26. Wang Li-Mei et al. CCPG1 involved in corneal Aspergillus fumigatus infection. (2022) INTERNATIONAL JOURNAL OF OPHTHALMOLOGY (ENGLISH EDITION) 2222-3959 2227-4898 15 4 541-546
  27. * Demeter Amanda et al. Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells. (2022) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 12
  28. Mei Si et al. Dysbiosis: The first hit for digestive system cancer. (2022) FRONTIERS IN PHYSIOLOGY 1664-042X 13
  29. * Sudhakar P. et al. Integrated analysis of microbe-host interactions in Crohn's disease reveals potential mechanisms of microbial proteins on host gene expression. (2022) ISCIENCE 2589-0042 25 5
  30. Xue M.-Y. et al. Investigation of fiber utilization in the rumen of dairy cows based on metagenome-assembled genomes and single-cell RNA sequencing. (2022) MICROBIOME 2049-2618 2049-2618 10 1
  31. Brendborg Nicklas. Jellyfish Age Backwards: Nature’s Secrets to Longevity. (2022)
  32. Brendborg Nicklas. La natura e i segreti della longevità: Capire i meccanismi evolutivi dell'invecchiamento per vivere più a lungo. (2022) ISBN:9788845410024
  33. Wang W. et al. Mucosa-Colonizing Microbiota Correlate With Host Autophagy Signaling in Patients With Inflammatory Bowel Disease. (2022) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 13
  34. Xu M. et al. Mycoplasma bovis inhibits autophagy in bovine mammary epithelial cells via a PTEN/PI3K-Akt-mTOR-dependent pathway. (2022) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 13
  35. He Y.-Z. et al. p62/SQSTM1 Participates in the Innate Immune Response of Macrophages Against Candida albicans Infection. (2022) INTERNATIONAL JOURNAL OF DERMATOLOGY AND VENEREOLOGY 2641-8746 2096-5540 5 2 75-81
  36. Fukushima S. et al. Recruitment of LC3 by Campylobacter jejuni to Bacterial Invasion Site on Host Cells via the Rac1-Mediated Signaling Pathway. (2022) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 12
  37. Li Qian et al. Burkholderia pseudomallei BipD hijacks host KLHL9/KLHL13/CUL3 E3 ligase to ubiquitinate IMMT that initiates mitophagy to evade killing. (2023) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015 1
  38. Yu Hongyan et al. Identification of multifunctionality of grass carp (Ctenopharyngodon idella) TBK1 during bacterial infection. (2023) FISH AND SHELLFISH IMMUNOLOGY 1050-4648 1095-9947 136
  39. Zhou Y. et al. Salmonella Enteritidis RfbD enhances bacterial colonization and virulence through inhibiting autophagy. (2023) MICROBIOLOGICAL RESEARCH 0944-5013 1618-0623 270
  40. Khan Sohrab et al. Antioxidative Sirt1 and the Keap1-Nrf2 Signaling Pathway Impair Inflammation and Positively Regulate Autophagy in Murine Mammary Epithelial Cells or Mammary Glands Infected with Streptococcus uberis. (2024) ANTIOXIDANTS 2076-3921 13 2 p. 171
  41. Singh Samvedna et al. Computational methods for detection of host-pathogen interactions. (2024) In: Systems Biology Approaches for Host-Pathogen Interaction Analysis pp. 103-130
  42. Zhou Yi et al. Salmonella Enteritidis RfbD interferes with autophagy through REDD1 to promote bacterial survival. (2024) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
15.
Sun, Duanchen ; Xianwen, Ren ; Ari, Eszter ; Korcsmáros, Tamás ; Csermely, Péter ; Ling-Yun, Wu ✉
BRIEFINGS IN BIOINFORMATICS 20 : 1 pp. 89-101. , 13 p. (2019)
Publication:3280772 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 15 | Independent citation: 14 | Self citation: 1 | Unknown citation: 0 | Number of citations in WoS: 11 | Number of citations in Scopus: 11 | WoS/Scopus assigned: 13 | Number of citations with DOI: 14
Article (Journal Article) | Scientific[3280772] [Validated]
All citations+mentions: 15, External citations: 14, Self citations: 1, Unhandled citations: 0
  1. * Sun Duanchen et al. CEA: Combination-based gene set functional enrichment analysis. (2018) SCIENTIFIC REPORTS 2045-2322 2045-2322 8 1 p. 13085
  2. Li Xiong et al. Heterogeneity Analysis and Diagnosis of Complex Diseases Based on Deep Learning Method. (2018) SCIENTIFIC REPORTS 2045-2322 2045-2322 8 1 p. 6155
  3. Li Xingyi et al. DualRank: multiplex network-based dual ranking for heterogeneous complex disease analysis. (2019) In: DMCTOP: Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network pp. 812-817
  4. Wang Yanda et al. Adversarially regularized medication recommendation model with multi-hop memory network. (2020) KNOWLEDGE AND INFORMATION SYSTEMS 0219-1377 0219-3116 63 1 125-142
  5. Guo W.-F. et al. Network control principles for identifying personalized driver genes in cancer. (2020) BRIEFINGS IN BIOINFORMATICS 1467-5463 1477-4054 21 5 1641-1662
  6. Shi K. et al. Identifying Molecular Biomarkers for Diseases with Machine Learning Based on Integrative Omics. (2021) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1545-5963 1557-9964 18 6 2514-2525
  7. Wang F et al. Knowledge-Guided "Community Network" Analysis Reveals the Functional Modules and Candidate Targets in Non-Small-Cell Lung Cancer. (2021) CELLS 2073-4409 10 2
  8. Li X. et al. A Dual Ranking Algorithm Based on the Multiplex Network for Heterogeneous Complex Disease Analysis. (2022) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1545-5963 1557-9964 19 4 1993-2002
  9. Li X. et al. A multi-source fusion method to identify biomarkers for breast cancer prognosis based on dual-layer heterogeneous network. (2022) In: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) pp. 471-476
  10. Li Chao et al. Identification and Validation of TRIM25 as a Glucose Metabolism Regulator in Prostate Cancer. (2022) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 23 16
  11. Zhong Jiayuan et al. Identifying the critical state of complex biological systems by the directed-network rank score method. (2022) BIOINFORMATICS 1367-4803 1460-2059 38 24 5398-5405
  12. Jeong D. et al. GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype. (2023) BIOINFORMATICS 1367-4803 1460-2059 39 10
  13. Barriga Sanchez Luis. Identificación de posibles dianas terapéuticas en Alzheimer utilizando pipeline bioinformático combinado para aplicarlas al diseño de fármacos asistidos por computadora.. (2023)
  14. 魏丕 静 et al. Key gene identification algorithm based on multi-layer network. (2023) Chinese Journal of Bioinformatics 1672-5565 21 4 277-285
  15. Holbrook Joseph H et al. Quantitative Mass Spectrometry Imaging: Therapeutics & Biomolecules. (2024) CHEMICAL COMMUNICATIONS 1359-7345 1364-548X 60 16
16.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115 : 25 pp. E5726-E5735. , 10 p. (2018)
Locked Publication:3390047 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 87 | Independent citation: 66 | Self citation: 21 | Unknown citation: 0 | Number of citations in WoS: 54 | Number of citations in Scopus: 59 | WoS/Scopus assigned: 61 | Number of citations with DOI: 70
Article (Journal Article) | Scientific[3390047] [Validated]
All citations+mentions: 87, External citations: 66, Self citations: 21, Unhandled citations: 0
  1. * Szili Petra et al. Antibiotic usage promotes the evolution of resistance against gepotidacin, a novel multi-targeting drug. (2018)
  2. Jakočiūnas Tadas et al. CasPER, a method for directed evolution in genomic contexts using mutagenesis and CRISPR/Cas9. (2018) METABOLIC ENGINEERING 1096-7176 1096-7184 48 288-296
  3. Simon Anna J. et al. Retroelement-Based Genome Editing and Evolution. (2018) ACS SYNTHETIC BIOLOGY 2161-5063 7 11 2600-2611
  4. Winkler J. D.. The Resistome: updating a standardized resource for analyzing resistance phenotypes. (2018)
  5. Sailer Z. R. et al. Uninterpretable Interactions: Epistasis as Uncertainty. (2018)
  6. Ordiyants Irina Mikhailovna et al. Великая немая [Great mute]. (2018) STATUSPRAESENS 2074-2347 4 49 60-67
  7. Selles Vidal Lara. A broadly applicable artificial selection system for biomolecule evolution. (2019)
  8. * Csörgő B. et al. A Minimal CRISPR-Cas3 System for Genome Engineering. (2019)
  9. * Guzmán Gabriela I et al. Enzyme promiscuity shapes adaptation to novel growth substrates. (2019) MOLECULAR SYSTEMS BIOLOGY 1744-4292 1744-4292 15 4
  10. Hosseini Sayed-Rzgar et al. Estimating the predictability of cancer evolution. (2019) BIOINFORMATICS 1367-4803 1460-2059 35 14 I389-I397
  11. Martínez-García Esteban et al. Pseudomonas putida in the quest of programmable chemistry. (2019) CURRENT OPINION IN BIOTECHNOLOGY 0958-1669 1879-0429 59 111-121
  12. * Szili Petra et al. Rapid Evolution of Reduced Susceptibility against a Balanced Dual-Targeting Antibiotic through Stepping-Stone Mutations.. (2019) ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 0066-4804 1098-6596 63 9
  13. Kostanjšek Matic. Različne uporabe sistema CRISPR/Cas9, trenutne omejitve in obeti za prihodnost. (2019)
  14. van Ravesteyn T.W.. Replication-coupled Gene Editing in Mammalian cells. (2019)
  15. Simon Anna J. et al. Synthetic evolution. (2019) NATURE BIOTECHNOLOGY 1087-0156 1546-1696 37 7 730-743
  16. * Nyerges Ákos József. Systematic genome engineering approaches to investigate mutational effects and evolutionary processes. (2019)
  17. Chen Lihao et al. 生殖支原体耐药分子流行病学与机制研究进展 [Update of molecular epidemiology and mechanism in drug resistance of mycoplasma genitalium]. (2019) Chinese Journal of Aids & STD 1672-5662 25 11 1196-1199
  18. * Csoergo Balint et al. A compact Cascade-Cas3 system for targeted genome engineering. (2020) NATURE METHODS 1548-7091 1548-7105 17 12 p. 1183+
  19. Xu Ning et al. Combining protein and metabolic engineering to construct efficient microbial cell factories. (2020) CURRENT OPINION IN BIOTECHNOLOGY 0958-1669 1879-0429 66 27-35
  20. Borrero-de Acuna Jose Manuel et al. Expanding the Reach of Recombineering to Environmental Bacteria. (2020) TRENDS IN BIOTECHNOLOGY 0167-7799 1879-3096 38 7 684-685
  21. Lammens Eveline-Marie et al. Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria. (2020) NATURE COMMUNICATIONS 2041-1723 2041-1723 11 1
  22. * Aparicio Tomas et al. High-Efficiency Multi-site Genomic Editing of Pseudomonas putida through Thermoinducible ssDNA Recombineering. (2020) ISCIENCE 2589-0042 23 3
  23. * Wannier Timothy M. et al. Improved bacterial recombineering by parallelized protein discovery. (2020) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 0027-8424 1091-6490 117 24 13689-13698
  24. Chen Cong et al. Integrating CRISPR-Enabled Trackable Genome Engineering and Transcriptomic Analysis of Global Regulators for Antibiotic Resistance Selection and Identification in Escherichia coli. (2020) MSYSTEMS 2379-5077 2379-5077 5 2
  25. * Aparicio Tomas et al. Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene. (2020) ENVIRONMENTAL MICROBIOLOGY 1462-2912 1462-2920 22 1 45-58
  26. Delgano Natasha Nicole. Molecular Mechanisms Underlying Resistance to Clinical Combination Therapy in Acinetobacter baumannii. (2020)
  27. Fodor András et al. Multidrug Resistance (MDR) and Collateral Sensitivity in Bacteria, with Special Attention to Genetic and Evolutionary Aspects and to the Perspectives of Antimicrobial Peptides—A Review. (2020) PATHOGENS 2076-0817 9 7
  28. * Hueso-Gil Angeles et al. Multiple-Site Diversification of Regulatory Sequences Enables Interspecies Operability of Genetic Devices.. (2020) ACS SYNTHETIC BIOLOGY 2161-5063 9 1 104-114
  29. Dench Jonathan. New Computational Approaches to Study the Evolution of Asexual Haploids. (2020)
  30. * Ostrov Nili et al. Parallelized in vivo Construction of a Synthetic 57-Codon E. coli Genome. (2020)
  31. Racovita Adrian et al. Reinforcement learning in synthetic gene circuits. (2020) BIOCHEMICAL SOCIETY TRANSACTIONS 0300-5127 1470-8752 48 4 1637-1643
  32. * Lamut Andraž et al. Second generation 4,5,6,7-tetrahydrobenzo[d]thiazoles as novel DNA gyrase inhibitors.. (2020) FUTURE MEDICINAL CHEMISTRY 1756-8919 1756-8927 12 4 277-297
  33. * Csörgő Bálint et al. Targeted mutagenesis of multiple chromosomal regions in microbes. (2020) CURRENT OPINION IN MICROBIOLOGY 1369-5274 1879-0364 57 22-30
  34. Alnomani Yaqdhan et al. The association of acetylacetate (Acr AB-Tol C) and QepA genes with multiple antibiotic resistance among Escherichia coli clinical isolates. (2020) REVIEWS IN MEDICAL MICROBIOLOGY 0954-139X 31 3 159-164
  35. Zhang Li et al. A Comprehensive System for Detecting Rare Single Nucleotide Variants based on Competitive DNA Probe and Duplex-specific Nuclease. (2021) ANALYTICA CHIMICA ACTA 0003-2670 1873-4324 1166
  36. Baier F. et al. Addressing evolutionary questions with synthetic biology. (2021) In: Evolutionary Systems Biology: Advances, Questions, and Opportunities pp. 135-157
  37. Kim Tom Dongmin et al. Bacillus weihenstephanensis can readily evolve for increased endospore heat resistance without compromising its thermotype. (2021) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY 0168-1605 1879-3460 341
  38. Filsinger G.T. et al. Characterizing the portability of phage-encoded homologous recombination proteins. (2021) NATURE CHEMICAL BIOLOGY 1552-4450 1552-4469 17 4 394-402
  39. * Nyerges Ákos et al. Construction of a Synthetic 57-Codon E. coli Chromosome and Tools for Microbial Genome-Scale Recoding. (2021)
  40. Wellner Alon et al. Continuous Evolution of Proteins In Vivo. (2021) In: Protein Engineering pp. 3-28
  41. Leon Lina Maria. CRISPR-Cas3: Studying the molecular interactions that drive adaptation & engineering novel bacterial editing tools. (2021)
  42. Wang Y. et al. Directed Evolution: Methodologies and Applications. (2021) CHEMICAL REVIEWS 0009-2665 1520-6890 121 20 12384-12444
  43. Fraile Sofia et al. Engineering Tropism of Pseudomonas putida toward Target Surfaces through Ectopic Display of Recombinant Nanobodies. (2021) ACS SYNTHETIC BIOLOGY 2161-5063 10 8 2049-2059
  44. Schubert Max G. et al. High-throughput functional variant screens via in vivo production of single-stranded DNA. (2021) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 0027-8424 1091-6490 118 18
  45. Yi Xiao et al. Plasmid hypermutation using a targeted artificial DNA replisome. (2021) SCIENCE ADVANCES 2375-2548 2375-2548 7 29
  46. Chen J. et al. Progress in the construction and screening of random mutation library. (2021) SHENGWU GONGCHENG XUEBAO / CHINESE JOURNAL OF BIOTECHNOLOGY 1000-3061 1872-2075 37 1 163-177
  47. * Wannier Timothy M. et al. Recombineering and MAGE. (2021) NATURE REVIEWS METHODS PRIMERS 2662-8449 1
  48. * Al-ramahi Yamal et al. ssDNA recombineering boosts in vivo evolution of nanobodies displayed on bacterial surfaces. (2021) COMMUNICATIONS BIOLOGY 2399-3642 4 1
  49. Zhang Xuanxuan et al. Whole-Cell Biosensors Aid Exploration of Vanillin Transmembrane Transport. (2021) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 0021-8561 1520-5118 69 10 3114-3123
  50. Kennerley J.. An evolving synthetic biological platform for alkane production. (2022)
  51. * Leon Lina Maria et al. Crispr-Cas3 for Making Genomic Deletions and Inducing Recombination. (2022) US20220356470
  52. Racovita Adrian et al. Engineered gene circuits capable of reinforcement learning allow bacteria to master gameplaying. (2022)
  53. Pélissié B. et al. Genome Resequencing Reveals Rapid, Repeated Evolution in the Colorado Potato Beetle. (2022) MOLECULAR BIOLOGY AND EVOLUTION 0737-4038 1537-1719 39 2
  54. Angermayr S. Andreas et al. Growth-mediated negative feedback shapes quantitative antibiotic response. (2022) MOLECULAR SYSTEMS BIOLOGY 1744-4292 1744-4292 18 9
  55. Aparicio T. et al. High-Efficiency Multi-site Genomic Editing (HEMSE) Made Easy. (2022) In: Vaccine Design pp. 37-52
  56. Velázquez E. et al. Hypermutation of specific genomic loci of Pseudomonas putida for continuous evolution of target genes. (2022) MICROBIAL BIOTECHNOLOGY 1751-7907 1751-7915 15 9 2309-2323
  57. Wang X. et al. Improved dsDNA recombineering enables versatile multiplex genome engineering of kilobase-scale sequences in diverse bacteria. (2022) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 50 3 p. E15
  58. Zheng Yangyang et al. Improving Furfural Tolerance of Escherichia coli by Integrating Adaptive Laboratory Evolution with CRISPR-Enabled Trackable Genome Engineering (CREATE). (2022) ACS SUSTAINABLE CHEMISTRY & ENGINEERING 2168-0485 2168-0485 10 7 2318-2330
  59. Li Y. et al. Recent advances in high-throughput metabolic engineering: Generation of oligonucleotide-mediated genetic libraries. (2022) BIOTECHNOLOGY ADVANCES 0734-9750 1873-1899 59
  60. Huang C. et al. Research progress of pathway and genome evolution in microbes. (2022) SYNTHETIC AND SYSTEMS BIOTECHNOLOGY 2405-805X 2405-805X 7 1 648-656
  61. Wang Yizhe et al. Research progress on antibiotic resistance of Salmonella. (2022) FOOD QUALITY AND SAFETY 2399-1399 2399-1402 6
  62. Nazir Faiqa et al. Stimuli-sensitive drug delivery systems for site-specific antibiotic release. (2022) DRUG DISCOVERY TODAY 1359-6446 1878-5832 27 6 1698-1705
  63. * Rudolph Alexandra et al. Strategies to Identify and Edit Improvements in Synthetic Genome Segments Episomally. (2022)
  64. Butt Haroon et al. Synthetic evolution of herbicide resistance using a T7 RNAP-based random DNA base editor. (2022) LIFE SCIENCE ALLIANCE 2575-1077 5 12
  65. Boltsis Ilias et al. The genomic dimension in biodefense: Decontamination. (2022) In: Genomics in Biosecurity pp. 197-218
  66. * Yilmaz Suzan et al. Towards next-generation cell factories by rational genome-scale engineering. (2022) NATURE CATALYSIS 2520-1158 2520-1158 5 9 751-765
  67. Zimmermann Anna et al. A Cas3-base editing tool for targetable in vivo mutagenesis. (2023) NATURE COMMUNICATIONS 2041-1723 2041-1723 14 1
  68. Vinchhi Rhea et al. Adaptive and maladaptive consequences of deregulation in a bacterial gene regulatory network. (2023)
  69. * Daruka L et al. Antibiotics of the future are prone to resistance in Gram-negative pathogens. (2023)
  70. Sellés Vidal L. et al. A primer to directed evolution: current methodologies and future directions. (2023) RSC CHEMICAL BIOLOGY 2633-0679
  71. * Apjok Gábor et al. Characterization of antibiotic resistomes by reprogrammed bacteriophage-enabled functional metagenomics in clinical strains. (2023) NATURE MICROBIOLOGY 2058-5276 2058-5276 8 3 410-423
  72. Vogel Jörg et al. EAM highlights in FEMS 2023: from the Petri dish to planet Earth. (2023) microLife 2633-6693 03 November 2023 1-9
  73. Ghenu Ana-Hermina et al. Epistasis decreases with increasing antibiotic pressure but not temperature. (2023) PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B - BIOLOGICAL SCIENCES 0962-8436 1471-2970 378 1877
  74. Theuretzbacher U.. Evaluating the innovative potential of the global antibacterial pipeline. (2023) CLINICAL MICROBIOLOGY AND INFECTION 1198-743X 1469-0691
  75. Ghenu Ana-Hermina. Fitness landscapes for predicting evolution between environments. (2023)
  76. Yang Kevin B. et al. High-resolution landscape of an antibiotic binding site. (2023) NATURE 0028-0836 1476-4687
  77. Phuong Hai Bui et al. Impact of chemical modifications on the antimicrobial and hemolytic activity of helical amphipathic peptide Lasioglossin LL-III. (2023) AMINO ACIDS 0939-4451 1438-2199 55 1531-1544
  78. Hueso-Gil Angeles et al. In Vivo Sampling of Intracellular Heterogeneity of Pseudomonas putida Enables Multiobjective Optimization of Genetic Devices. (2023) ACS SYNTHETIC BIOLOGY 2161-5063
  79. Asin-Garcia Enrique et al. Metagenomics harvested genus-specific single-stranded DNA-annealing proteins improve and expand recombineering in Pseudomonas species. (2023) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 52
  80. Feng Jin et al. Multitarget antibacterial drugs: An effective strategy to combat bacterial resistance. (2023) PHARMACOLOGY & THERAPEUTICS 0163-7258 1879-016X 252
  81. Fraile S. et al. Programming bacterial adhesion to functionalized surfaces through cellular display of recombinant nanobodies. (2023) In: Methods in Microbiology pp. 123-141
  82. González-Delgado Alejandro et al. Simultaneous multi-site editing of individual genomes using retron arrays. (2023)
  83. Sanz-Garcia Fernando et al. Translating eco-evolutionary biology into therapy to tackle antibiotic resistance. (2023) NATURE REVIEWS MICROBIOLOGY 1740-1526 1740-1534
  84. Collins Jessica A. et al. Gyrase and Topoisomerase IV: Recycling Old Targets for New Antibacterials to Combat Fluoroquinolone Resistance. (2024) ACS INFECTIOUS DISEASES 2373-8227 2373-8227
  85. Oviatt Alexandria A. et al. Interactions between Gepotidacin and Escherichia coli Gyrase and Topoisomerase IV: Genetic and Biochemical Evidence for Well-Balanced Dual-Targeting. (2024) ACS INFECTIOUS DISEASES 2373-8227 2373-8227 -
  86. Zimmermann Anna et al. Mutagenesis techniques for evolutionary engineering of microbes – exploiting CRISPR-Cas, oligonucleotides, recombinases, and polymerases. (2024) TRENDS IN MICROBIOLOGY 0966-842X 1878-4380
  87. Sanz-García F. et al. The Pseudomonas aeruginosa Resistome: Permanent and Transient Antibiotic Resistance, an Overview. (2024) METHODS IN MOLECULAR BIOLOGY 1064-3745 1940-6029 2721 85-102
17.
METHODS IN ENZYMOLOGY 588 pp. 467-496. , 30 p. (2017)
Publication:3104399 Admin approved Core Citing Journal Article (Survey paper ) Scientific
Citing papers: 22 | Independent citation: 18 | Self citation: 4 | Unknown citation: 0 | Number of citations in WoS: 17 | Number of citations in Scopus: 17 | WoS/Scopus assigned: 17 | Number of citations with DOI: 17
Survey paper (Journal Article) | Scientific[3104399] [Admin approved]
All citations+mentions: 22, External citations: 18, Self citations: 4, Unhandled citations: 0
  1. Cui Jianzhou et al. CRISPR system for genome engineering: the application for autophagy study. (2017) BMB REPORTS 1976-6696 1976-670X 50 5 247-256
  2. Mathai Benan John et al. Studying autophagy in zebrafish. (2017) CELLS 2073-4409 6 3
  3. * Billes Viktor András et al. Developmentally regulated autophagy is required for eye formation in Drosophila.. (2018) AUTOPHAGY 1554-8627 1554-8635 14 9 1499-1519
  4. Mathai Benan John. Novel modulators of non-selective and selective autophagy. (2018)
  5. * Kerepesi Csaba et al. Prediction and characterization of human ageing-related proteins by using machine learning. (2018) SCIENTIFIC REPORTS 2045-2322 2045-2322 8
  6. * Barna János et al. Roles of heat shock factor 1 beyond the heat shock response. (2018) CELLULAR AND MOLECULAR LIFE SCIENCES 1420-682X 1420-9071 75 16 2897-2916
  7. Saera-Vila Alfonso et al. Autophagy in Zebrafish Extraocular Muscle Regeneration. (2019) METHODS IN MOLECULAR BIOLOGY 1064-3745 1940-6029 1854 105-117
  8. Tasrini Yara. Identification et analyse des facteurs bactériens impliqués dans les stades intra-macrophagiques de Burkholderia cenocepacia chez le poisson zèbre. (2019)
  9. De Calbiac H. Mechanisms of C9ORF72 pathogenicity and related autophagy impairment in amyotrophic lateral sclerosis. (2019)
  10. Valentina Tonelotto. Zebrafish as a model for dissecting the in vivo roles of Collagen VI.. (2019)
  11. Chávez Myra N. et al. Autophagy Activation in Zebrafish Heart Regeneration. (2020) SCIENTIFIC REPORTS 2045-2322 2045-2322 10 1
  12. Lama Sudeep et al. In Vitro and In Vivo Models for Evaluating the Oral Toxicity of Nanomedicines. (2020) NANOMATERIALS 2079-4991 10 11
  13. Tesseraud Sophie et al. Autophagy in farm animals: current knowledge and future challenges. (2021) AUTOPHAGY 1554-8627 1554-8635 17 8 1809-1827
  14. * Manzéger A et al. Condition-dependent functional shift of two Drosophila Mtmr lipid phosphatases in autophagy control. (2021) AUTOPHAGY 1554-8627 1554-8635 17 12 4010-4028
  15. Li Zhuoyan et al. GAA deficiency promotes angiogenesis through upregulation of Rac1 induced by autophagy disorder. (2021) BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 0167-4889 1879-2596 1868 5
  16. La Spina M. et al. Multiple Mechanisms Converging on Transcription Factor EB Activation by the Natural Phenol Pterostilbene. (2021) OXIDATIVE MEDICINE AND CELLULAR LONGEVITY 1942-0900 1942-0994 2021
  17. Urbańska Kaja et al. The Secrets of Alternative Autophagy. (2021) CELLS 2073-4409 10 11
  18. Choi Tae-Young et al. Zebrafish as an animal model for biomedical research. (2021) EXPERIMENTAL AND MOLECULAR MEDICINE 1226-3613 2092-6413 53 3 310-317
  19. Zhou Zhixia et al. Autophagy regulation in teleost fish: A double-edged sword. (2022) AQUACULTURE 0044-8486 1873-5622 558
  20. Smith Sarah J. et al. Lysosomes and the pathogenesis of merosin-deficient congenital muscular dystrophy. (2022) HUMAN MOLECULAR GENETICS 0964-6906 1460-2083 31 5 733-747
  21. KOUVAROU OLGA. [RESEARCH IN DIFFERENTIAL EXPRESSION OF GENES ASSOCIATED WITH AGING IN SKIN CANCERS]. (2022)
  22. Nguyen Ngan Thi et al. A computational predictor for autophagy-related proteins using interpretable machine learning and genetic algorithm. (2024) GENE REPORTS 2452-0144 34 p. 101876
18.
Métris, Aline ; Sudhakar, Padhmanand ; Fazekas, David ; Demeter, Amanda ; Ari, Eszter ; Olbei, Marton ; Branchu, Priscilla ; Kingsley, Rob A ; Baranyi, Jozsef ; Korcsmáros, Tamas
NPJ SYSTEMS BIOLOGY AND APPLICATIONS 3 Paper: 31 , 11 p. (2017)
Publication:3280749 Published Core Citing Journal Article (Article ) Scientific
Citing papers: 30 | Independent citation: 25 | Self citation: 5 | Unknown citation: 0 | Number of citations in WoS: 20 | Number of citations in Scopus: 19 | WoS/Scopus assigned: 20 | Number of citations with DOI: 21
Article (Journal Article) | Scientific[3280749] [Approved]
All citations+mentions: 30, External citations: 25, Self citations: 5, Unhandled citations: 0
  1. * Tanner Jennifer R. et al. Evolution of Salmonella within Hosts. (2018) TRENDS IN MICROBIOLOGY 0966-842X 26 12 986-998
  2. Perez-Sepulveda Blanca M. et al. Functional Transcriptomics for Bacterial Gene Detectives. (2018) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 6 5
  3. * Haddad N. et al. Next generation microbiological risk assessment—Potential of omics data for hazard characterisation. (2018) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY 0168-1605 1879-3460 287 28-39
  4. Soni Nikita et al. Landscape of ROD9 Island: Functional annotations and biological network of hypothetical proteins in Salmonella enterica. (2019) COMPUTATIONAL BIOLOGY AND CHEMISTRY 1476-9271 1476-928X 83
  5. * Olbei Marton et al. Network Biology Approaches to Identify Molecular and Systems-Level Differences Between Salmonella Pathovars. (2019) In: Foodborne Bacterial Pathogens pp. 265-273
  6. Carrillo Juan José. Remodelación del peptidoglicano de Salmonella por actividades ausentes en organismos no patogénicos. (2019)
  7. Garre Alberto et al. The use of trade data to predict the source and spread of food safety outbreaks: An innovative mathematical modelling approach. (2019) FOOD RESEARCH INTERNATIONAL 0963-9969 1873-7145 123 712-721
  8. Romero Cajas. Aislamiento de Salmonella spp., y Escherichia coli resistente a las β-Lactamasas (BLEE) en contenido cecal y ganglios mesentéricos en cerdos faenados en la Empresa Pública Metropolitana de Rastro Quito (EMRAQ-EP). (2020)
  9. Herod Adrian John. An Analysis of Salmonella from Molecular, Cellular, and Food Safety Perspectives. (2020)
  10. Rabello Renata F. et al. Antimicrobial Resistance in Farm Animals in Brazil: An Update Overview. (2020) ANIMALS 2076-2615 10 4 p. 552
  11. Rodrigues Grazielle Lima et al. Antimicrobial Resistance in Nontyphoidal Salmonella Isolates from Human and Swine Sources in Brazil: A Systematic Review of the Past Three Decades. (2020) MICROBIAL DRUG RESISTANCE 1076-6294 1931-8448
  12. Leifer Ian et al. Circuits with broken fibration symmetries perform core logic computations in biological networks. (2020) PLOS COMPUTATIONAL BIOLOGY 1553-734X 1553-7358 16 6
  13. Barh Debmalya et al. Pan-genomics: Applications, Challenges, and Future Prospects. (2020) ISBN:9780128170779
  14. Srivastava G.P. et al. Pan-interactomics and its applications. (2020) In: Pan-genomics: Applications, Challenges, and Future Prospects pp. 397-435
  15. Karanth Shraddha. Development of machine learning and advanced data analytical techniques to incorporate genomic data in predictive modeling for Salmonella enterica. (2021)
  16. Geddes-McAlister J. et al. Dual perspective proteomics infectome profiling discovers Salmonella type III secretion system effector functions in macrophages. (2021)
  17. Sokaribo Akosiererem Senibo. Investigation of Non-typhoidal Salmonella pathogenesis, Biofilm and Vaccine development. (2021)
  18. Makalatia K. et al. Investigation of salmonella phage-bacteria infection profiles: Network structure reveals a gradient of target-range from generalist to specialist phage clones in nested subsets. (2021) VIRUSES 1999-4915 13 7
  19. Parise Doglas. Reconstructing and assessing corynebacterial gene regulatory networks. (2021)
  20. * Stevens M.P. et al. Salmonella pathogenesis and host-adaptation in farmed animals. (2021) CURRENT OPINION IN MICROBIOLOGY 1369-5274 1879-0364 63 52-58
  21. James K. et al. Computational Network Inference for Bacterial Interactomics. (2022) MSYSTEMS 2379-5077 2379-5077 7 2
  22. Zorro-Aranda Andrea et al. Curation, inference, and assessment of a globally reconstructed gene regulatory network for Streptomyces coelicolor. (2022) SCIENTIFIC REPORTS 2045-2322 2045-2322 12 1
  23. Dinarvand Mojdeh et al. dRNASb: a systems biology approach to decipher dynamics of host- pathogen interactions using temporal dual RNA-seq data. (2022) MICROBIAL GENOMICS 2057-5858 2057-5858 8 9
  24. Karanth S. et al. Exploring the predictive capability of advanced machine learning in identifying severe disease phenotype in Salmonella enterica. (2022) FOOD RESEARCH INTERNATIONAL 0963-9969 1873-7145 151
  25. Romero Luis et al. Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes. (2022) FRONTIERS IN MICROBIOLOGY 1664-302X 1664-302X 13
  26. * Olbei Marton et al. Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level. (2022) MSYSTEMS 2379-5077 2379-5077 7 4
  27. Singh A. et al. Panomics to decode virulence and fitness in Gram-negative bacteria. (2022) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 12
  28. Leifer Ian et al. Symmetry-driven network reconstruction through pseudobalanced coloring optimization. (2022) JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT 1742-5468 1742-5468 2022 7 p. 073403
  29. Varela-Vega Alfredo et al. Fine-tuning BERT models to extract transcriptional regulatory interactions of bacteria from biomedical literature. (2024)
  30. Hkimi Chaima et al. Mycobacterium tuberculosis-THP-1 like macrophages protein-protein interaction map revealed through dual RNA-seq analysis and a computational approach. (2024) JOURNAL OF MEDICAL MICROBIOLOGY 0022-2615 1473-5644 73 2
19.
Ricotta, C ; Ari, E ; Bonanomi, G ; Giannino, F ; Heathfield, D ; Mazzoleni, S ; Podani, János
COMMUNITY ECOLOGY 18 : 1 pp. 37-46. , 10 p. (2017)
Publication:3247311 Published Core Citing Journal Article (Article ) Scientific
Citing papers: 2 | Independent citation: 2 | Self citation: 0 | Unknown citation: 0 | Number of citations in WoS: 1 | Number of citations in Scopus: 1 | WoS/Scopus assigned: 1 | Number of citations with DOI: 2
Article (Journal Article) | Scientific[3247311] [Approved]
All citations+mentions: 2, External citations: 2, Self citations: 0, Unhandled citations: 0
  1. Marcia J Waterway et al. Ecological and Evolutionary Diversification within the Genus Carex (Cyperaceae): Consequences for Community Assembly in Subarctic Fens. (2016) SYSTEMATIC BOTANY 0363-6445 1548-2324 41 3 558-579
  2. Feoli E.. Classification of plant communities and fuzzy diversity of vegetation systems. (2018) COMMUNITY ECOLOGY 1585-8553 1588-2756 19 2 186-198
20.
Ács, Éva ; Ari, Eszter ; Duleba, Mónika ; Dreßler, Mirko ; Genkal, Sergei I ; Jakó, Éena ; Rimet, Frédéric ; Ector, Luc ; Kiss, Keve Tihamér
FOTTEA 16 : 1 pp. 56-78. , 23 p. (2016)
Publication:3016822 Validated Core Citing Journal Article (Article ) Scientific
Citing papers: 61 | Independent citation: 46 | Self citation: 15 | Unknown citation: 0 | Number of citations in WoS: 43 | Number of citations in Scopus: 47 | WoS/Scopus assigned: 49 | Number of citations with DOI: 55
Article (Journal Article) | Scientific[3016822] [Validated]
All citations+mentions: 61, External citations: 46, Self citations: 15, Unhandled citations: 0
  1. Kociolek John P et al. New freshwater diatom genus, Theriotia gen. nov. of the Stephanodiscaceae (Bacillariophyta) from south-central China. (2016) PHYCOLOGICAL RESEARCH 1322-0829 1440-1835 64 4 274-280
  2. * Genkal Sergey I et al. On the morphology, taxonomy, ecology and distribution of Cyclotella rossii Hakansson (Bacillariophyta). (2016) NOVA HEDWIGIA 0029-5035 2363-7188 1438-9134 102 3-4 399-421
  3. * Peeters V et al. Atlas des diatomées des cours d’eau du territoire bourguignon: Volume 1: Centriques, Araphidées.. (2017) ISBN:9782111520912
  4. Tsoy Ira et al. Atlas of Diatom Algae and Silicoflagellates from Holocene Sediments of the Russion East Artic Seas. (2017) ISBN:9785990994317
  5. * Zhang Zhongyan et al. Cymbella pamirensis sp nov. (Bacillariophyceae) from an alpine lake in the Pamir Mountains, Northwestern China. (2017) PHYTOTAXA 1179-3155 1179-3163 308 2 249-258
  6. Udovic Marija Gligora et al. Defining centric diatoms of most relevant phytoplankton functional groups in deep karst lakes. (2017) HYDROBIOLOGIA 0018-8158 1573-5117 0324-0924 788 1 169-191
  7. Schwarz Anja et al. Mid- to late Holocene climate-driven regime shifts inferred from diatom, ostracod and stable isotope records from Lake Son Kol (Central Tian Shan, Kyrgyzstan). (2017) QUATERNARY SCIENCE REVIEWS 0277-3791 1873-457X 177 340-356
  8. Rioual Patrick et al. Morphology and ecology of a new centric diatom belonging to the Cyclotella comta (Ehrenberg) Kutzing complex: Lindavia khinganensis sp nov. from the Greater Khingan Range, Northeastern China. (2017) CRYPTOGAMIE ALGOLOGIE 0181-1568 1776-0984 38 4 349-377
  9. Novis Phil et al. The diatom Lindavia intermedia identified as the producer of nuisance pelagic mucilage in lakes. (2017) NEW ZEALAND JOURNAL OF BOTANY 0028-825X 1175-8643 55 4 479-495
  10. Pfeiffer Marco et al. Chronology, stratigraphy and hydrological modelling of extensive wetlands and paleolakes in the hyperarid core of the Atacama Desert during the late quaternary. (2018) QUATERNARY SCIENCE REVIEWS 0277-3791 1873-457X 197 224-245
  11. Van De Vijver et al. Cyclotella deceusteriana, a new centric diatom species (Bacillariophyta) from the sub-Antarctic Region. (2018) PHYTOTAXA 1179-3155 1179-3163 333 1 108-116
  12. Paillès Christine et al. Cyclotella petenensis and Cyclotella cassandrae , two new fossil diatoms from Pleistocene sediments of Lake Petén-Itzá, Guatemala, Central America. (2018) PHYTOTAXA 1179-3155 1179-3163 351 4 247-263
  13. * Duleba Mónika. Kovaalga fajok filogenetikai és morfológiai diverzitása. (2018)
  14. Mohan Joseph et al. Lindavia biswashanti , a new diatom species (Bacillariophyta) from Gokyo Cho, Himalayan Range, Nepal. (2018) PHYTOTAXA 1179-3155 1179-3163 364 1 101-107
  15. Alexson Elizabeth E. et al. Morphological variation around the Pantocsekiella comensis complex in the Laurentian Great Lakes. (2018) DIATOM RESEARCH 0269-249X 2159-8347 33 3 321-337
  16. * Genkal S. I. et al. New records of centric diatoms from Yakutia (Bolshoe Toko Lake): SEM morphology, ecology and distribution. (2018) NOVOSTI SISTEMATIKI NIZSHIKH RASTENII 0568-5435 52 2 245-252
  17. * SOLAK CN et al. The distribution of centric diatoms in different river catchments in the Anatolian Peninsula, Turkey. (2018) TURKISH JOURNAL OF BOTANY 1300-008X 1303-6106 42 100-122
  18. Frankova Marketa et al. The low temperature method for environmental scanning electron microscopy - a new method for observation of diatom assemblages in vivo. (2018) DIATOM RESEARCH 0269-249X 2159-8347 33 3 397-403
  19. Kheiri Somayyeh et al. Biodiversity of diatoms in the Karaj River in the Central Alborz, Iran. (2019) DIATOM RESEARCH 0269-249X 2159-8347 - 1-26
  20. Kireta Amy R. et al. Contemporary abundance patterns of Cyclotella sensu lato diatom taxa in Lake Superior: Assessing responses to physical and chemical gradients and potential links to climate change. (2019) JOURNAL OF GREAT LAKES RESEARCH 0380-1330 0380-1330 45 1 119-128
  21. Kheiri S. Diatoms, the best indicators in biomonitoring the aquatic ecosystems. (2019) Iran Nature 2538-4880 4 4 34-47
  22. YANG LI et al. Gomphosinica selincuoensis sp. nov., a new diatom (Bacillariophyceae) from North Tibet, China. (2019) PHYTOTAXA 1179-3155 1179-3163 423 3 195-205
  23. * ZHANG WEI et al. Halamphora daochengensis sp. nov., a new freshwater diatom species (Bacillariophyceae) from a small mountain lake, Sichuan Province, China. (2019) PHYTOTAXA 1179-3155 1179-3163 404 1 p. 12
  24. * Genkal S.I.. On the morphology and taxonomy of Cyclotella rossii (Bacillariophyta). (2019) NOVOSTI SISTEMATIKI NIZSHIKH RASTENII 0568-5435 53 241-245
  25. Hiroyuki Tanaka et al. Tertiarius kabutoiwaensis sp. nov. and T. minimus sp. nov. from a Pliocene deposit of the Kabutoiwa Formation, central Japan. (2019) DIATOM 0911-9310 2186-8565 35 35-48
  26. * Buczkó K et al. The first high resolution diatom record from Lake Balaton, Hungary in Central Europe. (2019) LIMNETICA 0213-8409 1989-1806 38 1 417-430
  27. Fontana Luciane et al. The impact of climate change and human activity on the ecological status of Bosten Lake, NW China, revealed by a diatom record for the last 2000 years. (2019) HOLOCENE 0959-6836 1477-0911 29 12 1871-1884
  28. Samant Bandana et al. Centropyxis aculeata (testate lobose amoebae) and associated diatoms from the intertrappean lacustrine sediments (Maastrichtian) of central India: implications in understanding paleolake ecology. (2020) PALAEONTOLOGIA ELECTRONICA 1935-3952 1094-8074 23 3 p. a60
  29. Al-saedy Rehab N et al. Checklist of Diatoms in Shatt Al-Arab River, Basrah Province, Southern Iraq. (2020) Biological and Applied Environmental Research 2002-6153 4 237-284
  30. Stone Jeffery R. et al. Fascinorbisgen. nov., a new genus of Stephanodiscaceae (Bacillariophyta) from a Late Miocene lacustrine diatomite. (2020) DIATOM RESEARCH 0269-249X 2159-8347 35 2 127-139
  31. Liao Mengna et al. Lake diatom response to climate change and sedimentary events on the southeastern Tibetan Plateau during the last millennium. (2020) QUATERNARY SCIENCE REVIEWS 0277-3791 1873-457X 241
  32. * Novis PM et al. Lindavia intermedia (Bacillariophyceae) and Nuisance lake Snow in New Zealand: Chitin Content and Quantitative PCR Methods to Estimate Cell Concentrations and Expression of Chitin Synthase. (2020) JOURNAL OF PHYCOLOGY 0022-3646 1529-8817 56 5 1232-1244
  33. Paillès Christine et al. New fossil genus and new extant species of diatoms (Stephanodiscaceae, Bacillariophyceae) from Pleistocene sediments in the Neotropics (Guatemala, Central America): adaptation to a changing environment?. (2020) EUROPEAN JOURNAL OF TAXONOMY 2118-9773 726 1-23
  34. * Genkal S. I.. New Species of the Genus Cyclotella (Kützing) Brébisson (Bacillariophyta) for the Flora of Russia. (2020) INTERNATIONAL JOURNAL ON ALGAE 1521-9429 22 3 215-222
  35. Rioual Patrick et al. Re-examination of Cyclotella lacunarum Hustedt (Bacillariophyta) from lakes in the Pamir Mountains, western China, and description of two similar Lindavia taxa collected from Tajikistan and Nepal. (2020) DIATOM RESEARCH 0269-249X 2159-8347 35 1 63-84
  36. Zaova Dusica et al. Tertiarius minutulus sp. nov. (Stephanodiscaceae, Bacillariophyta) - a new fossil diatom species from Lake Ohrid. (2020) EUROPEAN JOURNAL OF TAXONOMY 2118-9773 670 1-14
  37. Liu Yan et al. Valve ultrastructure of two species of the diatom genus Gomphonema Ehrenberg (Bacillariophyta) from Yunnan Province, China. (2020) FOTTEA 1802-5439 20 1 25-35
  38. Liao M. et al. A diatom record for eco-environmental change in Baiyangdian Lake over the recent 80 years. (2021) QUATERNARY SCIENCES 1001-7410 41 5 1254-1266
  39. LUETHJE MELINA et al. Climate-related morphological changes in Pantocsekiella (Mediophyceae) spanning 0-1.2 Ma in the Lake El’gygytgyn, northeastern Russia including Pantocsekiella elgygytgynensis sp. nov.. (2021) PHYTOTAXA 1179-3155 1179-3163 478 1 67-91
  40. Avendano Diana et al. Cyclotella (Bacillariophyceae) species present in sediments dating to Marine Isotope Stage 5 from Lake Chalco, central Mexico, with special reference to two new species: Cyclotella poyeka and Cyclotella tlalocii. (2021) DIATOM RESEARCH 0269-249X 2159-8347 36 4 323-344
  41. Levkov Zlatko et al. Cyclotella crawfordii - a new fossil diatom species from Lake Ohrid, North Macedonia. (2021) NOVA HEDWIGIA BEIHEFTE 1438-9134 151 55-66
  42. Biskaborn Boris K. et al. Effects of climate change and industrialization on Lake Bolshoe Toko, eastern Siberia. (2021) JOURNAL OF PALEOLIMNOLOGY 0921-2728 1573-0417 65 3 335-352
  43. Bulatov SA. [New species of diatoms (Bacillariophyta) for the flora of Kara-Bogaz-Gol Bay (Caspian Sea)]. (2021) BOTANICESKIJ ZURNAL 0006-8136 106 1 52-60
  44. Blagojević Ponjavić Ana. [Phytoplankton dynamics and the phenomenon of bloom of cyanobacterium Planktothrix rubescens in the Vrutci reservoir]. (2021)
  45. Rott Eugen et al. Planktonic centric diatoms from the Eastern Alps: morphology, biogeography and ecology. (2021) Plant and Fungal Systematics 2544-7459 66 1 1-36
  46. KRAHN KIM J. et al. Three new needle-shaped Fragilaria species from Central America and the Tibetan Plateau. (2021) PHYTOTAXA 1179-3155 1179-3163 479 1 1-22
  47. Yu Pan et al. A new freshwater species Achnanthidium kangdingnese (Bacillariophyta, Achnanthidiaceae) from Sichuan Province, China. (2022) PHYTOKEYS 1314-2011 1314-2003 . 204 97-108
  48. Naseri Ali et al. Diatom taxonomy and environmental drivers of biodiversity in the Taleghan River and reservoir in Central Alborz, Iran. (2022) DIATOM RESEARCH 0269-249X 2159-8347 37 3 199-226
  49. * BEAUGER AUDE et al. Gomphosphenia vallei (Bacillariophyta), a new diatom species from a stream in the “Réserve Naturelle Nationale de la Vallée de Chaudefour”, Massif Central (France). (2022) PHYTOTAXA 1179-3155 1179-3163 542 2 167-179
  50. García M. Luján et al. Paleoenvironmental changes of the last 16,000 years based on diatom and geochemical stratigraphies from the varved sediment of Holzmaar (West-Eifel Volcanic Field, Germany). (2022) QUATERNARY SCIENCE REVIEWS 0277-3791 1873-457X 293
  51. Zalat A et al. Recent and fossil freshwater diatoms of Poland: taxonomy, distribution and their significance in the environmental reconstruction Part 1. (2022) ISBN:9788364881862
  52. * Kulikovskiy Maxim et al. Resurrection of the diatom genus Stephanocyclus (Coscinodiscophyceae: Stephanodiscaceae) on the basis of an integrated molecular and morphological approach. (2022) FOTTEA 1802-5439 22 2 181-191
  53. Danz A. et al. The genus Orthoseira Thwaites: historical overview, current status and recommendations for the future. (2022) NOVA HEDWIGIA 0029-5035 2363-7188 1438-9134 115 1-2 1-29
  54. Deng Y.N. et al. A palaeoecological study investigating the impacts of multiple tephra depositions on a lacustrine ecosystem in Northeast China, using diatoms as environmental indicators. (2023) JOURNAL OF PALEOLIMNOLOGY 0921-2728 1573-0417
  55. Vijver Bart Van et al. Bibliographic and taxonomic data related to the career of Luc Ector. (2023) NOVA HEDWIGIA 0029-5035 2363-7188 1438-9134 117 1-4 381-421
  56. Dulias Katharina et al. Diatom DNA from Lake Sediments. (2023) In: Tracking Environmental Change Using Lake Sediments pp. 205-233
  57. Duda Matthew P. et al. Environmental optima for common diatoms from Ontario lakes along gradients of lakewater pH, total phosphorus concentration, and depth. (2023) JOURNAL OF PALEOLIMNOLOGY 0921-2728 1573-0417
  58. Kulikovskiy Maxim S. et al. Gandhia gen. nov.—A New Diatom Genus with Unusual Morphology Split Off from the Genus Navicula Bory. (2023) PLANTS-BASEL 2223-7747 12 23 p. 3941
  59. * Schultz Konrad et al. Morphological and taxonomic implications of the formation of colonies in Cyclostephanos and Stephanodiscus (Bacillariophyta). (2023) EUROPEAN JOURNAL OF PHYCOLOGY 0967-0262 1469-4433 59 1-11
  60. * Genkal S.I. et al. Morphology and population size structure of Pantocsekiella teletskoyensis (Bacillatiophyta) in the deep mountain lake. (2023) ACTA BIOLOGICA SIBIRICA 2412-1908 9 . 403-415
  61. Genkal S. et al. AN INERESTING FINDING OF THE CENTRIC DIATOM PANTOCSEKIELLA COMENSIS (BACILLARIOPHYTA) N THE WATER BODIES OF THE MIDDLE AND SOUTHERN URALS. (2024) Transactions of Papanin Institute for Biology of Inland Waters RAS 0320-3557 2712-8377 - 104 7-13
2024-04-25 10:00