1.
Asbóth, András ; Stirling, Tamás* ; Méhi, Orsolya* ; Apjok, Gábor ; Sousa, Victor Klein De ; Taylor, Nicholas M. I. ; Mehdi, Hiba Hadj ; Papp, Balázs ; Ari, Eszter ; Kintses, Bálint ✉
A global map of receptor-binding protein compatibility for the programmable design of Klebsiella and Acinetobacter phages (2026)
Preprint DOI
Közlemény:36978461 Nyilvános Forrás Idéző Egyéb (Csak repozitóriumban hozzáférhető közlemény ) Tudományos
Csak repozitóriumban hozzáférhető közlemény (Egyéb) | Tudományos[36978461] [Nyilvános]
2.
Balogh, Gergő Mihály ✉ ; Koncz, Balázs ; Asztalos, Leó ; Ari, Eszter ; Gémes, Nikolett ; Szebeni, Gábor J. ; Papp, Benjamin Tamás ; Tóth, Franciska ; Papp, Balázs ; Pál, Csaba ✉ et al.
C > U mutations generate immunogenic peptides in SARS-CoV-2
NATURE COMMUNICATIONS 16 : 1 Paper: 10156 , 13 p. (2025)
DOI WoS REAL Scopus PubMed Egyéb URL SZTE Publicatio
Közlemény:36444923 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
Nyilvános idéző összesen: 1 | Független: 1 | Függő: 0 | Nem jelölt: 0 | DOI jelölt: 1
Szakcikk (Folyóiratcikk) | Tudományos[36444923] [Egyeztetett]
Nyilvános idéző összesen: 1, Független: 1, Függő: 0, Nem jelölt: 0
  1. Colson Philippe et al. APOBEC cellular enzymes as ‘court jesters’ in SARS-CoV-2 evolution. (2026) VIRUS GENES 0920-8569 1572-994X 62
3.
Daruka, Lejla ; Czikkely, Márton Simon* ; Szili, Petra* ; Farkas, Zoltán* ; Balogh, Dávid ; Grézal, Gábor ; Maharramov, Elvin ; Vu, Thu-Hien ; Sipos, Levente ; Juhász, Szilvia et al.
ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro
NATURE MICROBIOLOGY 10 : 2 pp. 313-331. , 19 p. (2025)
DOI WoS REAL Scopus PubMed Egyéb URL SZTE Publicatio
Közlemény:35685373 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
Nyilvános idéző összesen: 73 | Független: 69 | Függő: 4 | Nem jelölt: 0 | WoS jelölt: 51 | Scopus jelölt: 14 | WoS/Scopus jelölt: 51 | DOI jelölt: 67
Szakcikk (Folyóiratcikk) | Tudományos[35685373] [Egyeztetett]
Nyilvános idéző összesen: 73, Független: 69, Függő: 4, Nem jelölt: 0
  1. Wu Pengfei et al. Advanced Strategies in Phage Research: Innovations, Applications, and Challenges. (2025) MICROORGANISMS 2076-2607 13 8 p. 1960
  2. Zhao Weizhong et al. A novel generative framework for designing pathogen-targeted antimicrobial peptides with programmable physicochemical properties. (2025) PLOS COMPUTATIONAL BIOLOGY 1553-734X 1553-7358 21 12 p. e1013833
  3. Yuan Yongtian et al. Antibacterial activity and mechanism of naphthoquine phosphate against ceftazidime-resistant Acinetobacter baumannii via cell membrane disruption and ROS induction. (2025) FRONTIERS IN MICROBIOLOGY 1664-302X 16
  4. Blaskovich Mark A. et al. Antibiotics re-booted—time to kick back against drug resistance. (2025) npj Antimicrobials and Resistance 2731-8745 3 1
  5. Raka Vrushali et al. Antimicrobial Peptides (AMPs) as Potential Antibiotics: Classification, Development and Future Prospects in Combating Multi-drug Resistant Pathogens. (2025) INDIAN JOURNAL OF MICROBIOLOGY 0046-8991 0973-7715 65
  6. Pipitò Luca et al. Antimicrobial Resistance in ESKAPE Pathogens: A Retrospective Epidemiological Study at the University Hospital of Palermo, Italy. (2025) ANTIBIOTICS 2079-6382 2079-6382 14 2 p. 186
  7. Novoskol'tseva O. A. et al. ANTIMIKROBNYE POLIMERY (mini-obzor). (2025) Vysokomolekuljarnye Soedinenija. Serija S 2308-1147 2412-9860 67 1 80-89
  8. Ibrahim Shaikh et al. Breaking Barriers in Biofilm Control: ZnS and Au@ZnS Core-Shell Nanoconjugates Target ESKAPE Pathogens. (2025) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  9. Woźniak-Pawlikowska Agata et al. Cationic Heme-Mimetic Gallium Porphyrin as a Resistance-Free Strategy for Targeting Biofilms. (2025) SOCIAL SCIENCE RESEARCH NETWORK: SSRN 1556-5068
  10. Shafikhani Sasha. Closing Editorial: Immunopathogenesis of Bacterial Infection. (2025) CELLS 2073-4409 14 23 p. 1894
  11. LaTurner Zachary W. et al. Cross-order detection of bacteriophage transduction in communities using ribosomal RNA barcoding. (2025)
  12. Ritz Emily et al. Cross resistance emergence to polymyxins in Acinetobacter baumannii exposed in vitro to an antimicrobial peptide. (2025) npj Antimicrobials and Resistance 2731-8745 3 1
  13. Ding Si‐Qi et al. Crosstalk Between Microbiome and Ferroptosis in Diseases: From Mechanism to Therapy. (2025) COMPREHENSIVE PHYSIOLOGY 2040-4603 2040-4603 15 4
  14. Aldea Alexandru Constantin et al. Detecting antibiotic resistance: classical, molecular, advanced bioengineering, and AI-enhanced approaches. (2025) FRONTIERS IN MICROBIOLOGY 1664-302X 16
  15. Aldea Alexandru Constantin et al. Detecting antibiotic resistance: classical, molecular, advanced bioengineering, and AI-enhanced approaches. (2025) FRONTIERS IN MICROBIOLOGY 1664-302X 16
  16. Al-Shammary Ali Hassan et al. Dynamic Efficacy of Cloves Against Pluripotent Acinetobacter baumannii Recovered from Raw Milk of Mastitis Cow. (2025) Journal of Animal Health and Production 2308-2801 13 s1 p. 477
  17. West Jason Scott. Early Implementation of Process Chemistry Principles in an Academic Drug Discovery Program to Enable Antibacterial Research. (2025)
  18. Traore Kandas et al. Engineered bacteriophages for therapeutic and diagnostic applications. (2025) DISEASE MODELS & MECHANISMS 1754-8403 1754-8411 18 9
  19. Yadav Bipin et al. Environmental and clinical impacts of antibiotics’ sub-minimum inhibitory concentrations on the development of resistance in acinetobacter baumannii. (2025) SCIENCE OF THE TOTAL ENVIRONMENT 0048-9697 1879-1026 979 p. 179521
  20. Peek James et al. Environmental resistome–guided development of resistance-tolerant antibiotics. (2025) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 0027-8424 1091-6490 122 21
  21. Karve Shraddha. Evolutionary Novelties in Bacteria and the Missing Backdrop of the Environment. (2025) ENVIRONMENTAL MICROBIOLOGY 1462-2912 1462-2920 27 1
  22. He Yuhang et al. Expanding the antimicrobial spectrum of lugdunin: Discovery of multi-cationic derivatives of lugdunin with antimicrobial activity against gram-positive and gram-negative bacteria. (2025) EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY 0223-5234 1768-3254 299
  23. * Maharramov Elvin et al. Exploring the principles behind antibiotics with limited resistance. (2025) NATURE COMMUNICATIONS 2041-1723 16 1
  24. Martiny Hannah-Marie et al. Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes. (2025) NATURE COMMUNICATIONS 2041-1723 16 1
  25. Ibarguren-Quiles Clara et al. Identification and Functional Insights into New Phage Tail-Like Bacteriocins (PTLBs) Targeting Pseudomonas aeruginosa as new antimicrobials. (2025)
  26. LaTurner Zachary W. Identifying hosts of bacteriophage transduction in microbial communities with RNA-addressable modification. (2025)
  27. Moreno-Contreras VI et al. La resistencia a los antibióticos, ¿a qué nos estamos enfrentando?. (2025) Revista Mexicana de Industria y Salud 2594-1445 3 22 59-69
  28. Grebenkina Polina et al. Modulation of NK Cell Properties by ESKAPE Group Bacteria. (2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 26 17 p. 8449
  29. Haseeb Usama et al. Molecular Characterization of KPC-2 and CMY AmpC Beta Lactamases in Ceftazidime-Avibactam Resistant Klebsiella pneumoniae in a Tertiary Care Hospital. (2025) CUREUS 2168-8184 17 10
  30. Liu Zemin et al. Multicenter epidemiological distribution, pathogens, and drug-resistance characteristics of chronic osteomyelitis in Central China. (2025) FRONTIERS IN PUBLIC HEALTH 2296-2565 13
  31. Liu Zemin et al. Multicenter epidemiological distribution, pathogens, and drug-resistance characteristics of chronic osteomyelitis in Central China. (2025) FRONTIERS IN PUBLIC HEALTH 2296-2565 13
  32. Aminov Rustam. Novel antibiotic discovery and the antibiotic resistome. (2025) EXPERT OPINION ON DRUG DISCOVERY 1746-0441 1746-045X 20 1-15
  33. Molina-Hernández Javier et al. Optimization of sequential therapies to maximize extinction of resistant bacteria through collateral sensitivity. (2025)
  34. Nabona Jackim et al. Phage metagenome-assembled genomes portraying anti-ESKAPE and anti-CRISPR/Cas potential; datasets from sewage-clinical settings of Western Uganda, sub–Saharan Africa. (2025) bioRxiv 2692-8205
  35. Das Nilakshi et al. Rational Drug Designing for Antimicrobial Resistance: New Strategies and Targets. (2025) CURRENT PHARMACOLOGY REPORTS 2198-641X 11 1
  36. Liu Zhuang et al. Regulation of MXene Membranes with β-Lactoglobulin Nanofiber-Templated CuS Nanoparticles for Photothermal Antibacterial Effect. (2025) POLYMERS 2073-4360 17 14 p. 1960
  37. Li Fulei et al. Restoring tigecycline efficacy with lysine supplementation in tmexCD-toprJ-positive bacteria. (2025) INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS 0924-8579 1872-7913 66 p. 107511
  38. Dzierżyńska Maria et al. Role of Structural Modifications in Peptidomimetic Compounds as Potential Antimicrobial Agents against Staphylococcus aureus and Streptococcus pyogenes : Balancing Bioavailability, Safety, and Antimicrobial Activity. (2025) ACS OMEGA 2470-1343 2470-1343 10
  39. Capasso Carla et al. Scorpion Venom-Derived Peptides: A New Weapon Against Carbapenem-Resistant Acinetobacter baumannii. (2025) MICROORGANISMS 2076-2607 14 1 p. 68
  40. Ghosh Dastidar Nilanjan et al. Selective silencing of antibiotic-tethered ribosomes as a resistance mechanism against aminoglycosides. (2025) NATURE COMMUNICATIONS 2041-1723 16 1
  41. Alfano Antonella Ilenia et al. Sustainable Joullié–Ugi and Continuous Flow Implementation Led to Novel Captopril-Inspired Broad-Spectrum Metallo-β-Lactamase Inhibitors. (2025) JOURNAL OF MEDICINAL CHEMISTRY 0022-2623 1520-4804 68
  42. Guo Shuwen et al. Synthesis of guanylhydrazone functionalized tetraphenylethylene for combating antibiotic resistance and biofilms. (2025) CHEMICAL ENGINEERING JOURNAL 1385-8947 1873-3212 525 p. 169722
  43. Jensen Emilie Egholm et al. Tanzanian goat gut microbiomes adapt to roadside pollutants and environmental stressors. (2025) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 14 1
  44. Ibrahim Shaikh Imran et al. Targeting ESKAPE pathogens with ZnS and Au@ZnS Core–Shell nanoconjugates for improved biofilm control. (2025) SCIENTIFIC REPORTS 2045-2322 15 1
  45. Esmaeili Khoshmardan Maede et al. Unveiling the power of nanotechnology: a novel approach to eliminating antibiotic-resistant bacteria and genes from municipal effluent. (2025) ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 0269-4042 1573-2983 47 7
  46. Dolui Sandip et al. Virtual screening and molecular dynamics simulations reveal insights into drug repurposing strategies against New Delhi metallo-β-lactamase. (2025) LETTERS IN DRUG DESIGN AND DISCOVERY 1570-1808 1875-628X 22 p. 100156
  47. * Daruka Lejla et al. Addendum: ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro. (2026) NATURE MICROBIOLOGY 2058-5276 2058-5276 11 3 833-835
  48. Aldayel Munirah F. et al. Ag-decorated ZnO/MgO nanocomposite derived from Cinnamomum camphora: Synthesis and functional evaluation. (2026) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  49. Kong Qingzhou et al. AI agent-based discovery of D-enantiomeric antimicrobial peptides against multidrug-resistant bacterial infection. (2026) BIOMATERIALS 0142-9612 1878-5905 329 p. 123927
  50. Zhao Yinuo et al. AI‐Based D‐Amino Acid Substitution for Optimizing Antimicrobial Peptides to Treat Multidrug‐Resistant Bacterial Infection. (2026) ADVANCED SCIENCE 2198-3844 13 10
  51. * Chakraborty Sohini et al. An ATP‐Mediated Antibiotic β‐Peptide Nanofiber That Kills Multidrug‐Resistant Bacteria via a Multistage Mechanism. (2026) ADVANCED SCIENCE 2198-3844
  52. Wu-Mo Calina et al. Artificial Intelligence-Driven Discovery and Optimization of Antimicrobial Peptides Targeting ESKAPE Pathogens and Multidrug-Resistant Fungi. (2026) MICROORGANISMS 2076-2607 14 3 p. 591
  53. Mendes Sérgio G. et al. Ciprofloxacin resistance enhances biofilm formation and modulates virulence in Acinetobacter baumannii: Insights into the role of efflux pumps and quorum sensing. (2026) EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES 0934-9723 1435-4373 45
  54. Priya Manisha et al. Circumnavigating antibiotic mechanisms of action and resistance research. (2026) BIOCHEMISTRY 0006-2960 1520-4995 65 3 249-262
  55. Barakat Hassan et al. Droplet microfluidics strategies for overcoming bottlenecks in antibiotics discovery. (2026) ISCIENCE 2589-0042 29 1 p. 114377
  56. Calvo Lorena G. et al. Employment of a Resazurin Viability-Based Assay for Minimum Inhibitory and Bactericidal Concentration Determination. (2026) PHARMACEUTICALS 1424-8247 19 3 p. 505
  57. Coronado–García Brenda Liset et al. Enhanced amoxicillin degradation using HKUST–1(Cu/Fe)–derived CuO–Fe/BiVO4 photocatalyst: reduction of toxicity and antimicrobial activity. (2026) JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING 2213-3437 2213-3437 14 p. 121045
  58. Pica Francesca. Epidemiology, Clinical Microbiology and Antimicrobial Therapy: A Shared Effort Against Infectious Diseases. (2026) ANTIBIOTICS 2079-6382 2079-6382 15 1 p. 97
  59. Senghore Madikay et al. Evolving Landscape of Respiratory Infections and AMR in the UAE: A 12-Year Nationwide Study of Regional Burden, Epidemiologic Trends and Policy Implications. (2026) INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES 1201-9712 1878-3511 164 p. 108389
  60. Wirth Roland et al. Functional resistomes in municipal wastewater treatment plants pose challenges to public health. (2026) WATER RESEARCH 0043-1354 1879-2448 288
  61. Ayil-Gutiérrez Benjamín Abraham et al. Genetic Elements That Contribute to Antibiotic Resistance in Bacteria of Clinical Importance. (2026) BACTERIA 2674-1334 5 1 p. 14
  62. Hoang Thu Thi et al. GREEN SYNTHESIS OF CQD/AGNPS COMPOSITE FROM GUAVA LEAF AND ITS POTENT ANTIMICROBIAL ACTIVITY AGAINST MULTIDRUG-RESISTANT ESKAPEE PATHOGENS. (2026) MATERIALS ADVANCES 2633-5409 25
  63. Clements Ashley E et al. Harnessing artificial intelligence for antimicrobial discovery and optimization.. (2026) CURRENT OPINION IN MICROBIOLOGY 1369-5274 1879-0364 91
  64. Fu Lingzi et al. Hydroxylamine enhances the iron double-cycle system to improve the removal efficiency of norfloxacin via Fe3O4@N-rGO/PMS system. (2026) CHEMICAL ENGINEERING JOURNAL 1385-8947 1873-3212 535 p. 175624
  65. Ibarguren-Quiles Clara et al. Identification and functional insights into new phage tail-like bacteriocins targeting Pseudomonas aeruginosa as new antimicrobials. (2026) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 14
  66. Noguerol Andrade Jéssica Cristina et al. Impact of an Antimicrobial Stewardship Program on Antibiotic Consumption, Bacterial Susceptibility, and Costs in a High-Complexity Public Hospital. (2026) ANTIBIOTICS 2079-6382 2079-6382 15 3 p. 264
  67. * Elvin Maharramov. Integrating rational design principles to develop resistance-limiting antibiotics for Gram-negative pathogens. (2026)
  68. Ni Yongliang et al. Microplastics enhance the risk of cross-genus dissemination of carbapenemase resistance plasmids in ICU patients. (2026) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 16
  69. Xu Xican et al. Nanozyme-powered detection platform for pyrophosphate and related biomarkers. (2026) CHEMICAL ENGINEERING JOURNAL 1385-8947 1873-3212 527 p. 171761
  70. Zhong Rongcui et al. Rational design of ivacaftor-derived antimicrobial peptidomimetics: Membrane-targeting strategy enhances broad-spectrum antimicrobial efficacy against MDR pathogens. (2026) EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY 0223-5234 1768-3254 302
  71. Moguel Barbara et al. Recent Microbial Evolutionary Insights From Metagenomics. (2026) GENOME BIOLOGY AND EVOLUTION 1759-6653 1759-6653 18 3
  72. Pandit Surabhi et al. Targeting Resistance Vulnerabilities of Clinical ESKAPE Isolates Using Lactoferrin and Its Functional Fragments. (2026) CURRENT MICROBIOLOGY 0343-8651 1432-0991 83 5
  73. Chen Pan et al. Time to Awaken a Forgotten Antibacterial Agent: A 10-year Nationwide Surveillance of Latamoxef Resistance in China Based on 46,716 Isolates and Establishment of Tentative Epidemiological Cut-Off Values. (2026) INFECTION AND DRUG RESISTANCE 1178-6973 1178-6973 Volume 19 1-16
4.
Zsichla, Levente ; Adravecz, Lilla ; Müller, Dalma ; Lemey, Philippe ; Lakatos, Áron ; Ari, Eszter ; Kusejko, Katharina ; Kouyos, Roger ; Szlávik, János ; Lakatos, Botond et al.
Molecular epidemiology of HIV-1 in Hungary: an evolving contact zone of colliding virus subtypes.
FRONTIERS IN MICROBIOLOGY 16 Paper: 1732254 , 19 p. (2025)
DOI WoS REAL Scopus PubMed
Közlemény:36851909 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
Szakcikk (Folyóiratcikk) | Tudományos[36851909] [Egyeztetett]
5.
Koncz, Mihály ; Stirling, Tamás* ; Hadj Mehdi, Hiba* ; Méhi, Orsolya* ; Eszenyi, Bálint ; Asbóth, András ; Apjok, Gábor ; Tóth, Ákos ; Orosz, László ; Vásárhelyi, Bálint Márk et al.
Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens
CELL 187 : 21 pp. 5901-5918.e28. , 47 p. (2024)
DOI REAL WoS Scopus PubMed SZTE Publicatio
Központi kezelésű Közlemény:35422693 Egyeztetett Forrás Idéző Folyóiratcikk (Sokszerzős vagy csoportos szerzőségű szakcikk ) Tudományos
Nyilvános idéző összesen: 45 | Független: 39 | Függő: 6 | Nem jelölt: 0 | WoS jelölt: 35 | Scopus jelölt: 27 | WoS/Scopus jelölt: 36 | DOI jelölt: 41
Sokszerzős vagy csoportos szerzőségű szakcikk (Folyóiratcikk) | Tudományos[35422693] [Egyeztetett]
Nyilvános idéző összesen: 45, Független: 39, Függő: 6, Nem jelölt: 0
  1. Leitner Lorenz et al. Guiding phage therapy with genomic surveillance. (2024) NATURE MICROBIOLOGY 2058-5276 2058-5276 9 11 2799-2800
  2. * Schneider György. A bakteriofág terápia helye és szerepe a posztantibiotikus érában. (2025) MAGYAR TUDOMÁNY 0025-0325 1588-1245 186 12 2496-2506
  3. McCalla Alexis J. et al. Acinetobacter phages use distinct strategies to breach the capsule barrier. (2025) PLOS PATHOGENS 1553-7366 1553-7374 21 9 p. e1013536
  4. * Gajic Ina et al. A Comprehensive Overview of Antibacterial Agents for Combating Multidrug-Resistant Bacteria: The Current Landscape, Development, Future Opportunities, and Challenges. (2025) ANTIBIOTICS 2079-6382 2079-6382 14 3 p. 221
  5. Liao Zhiyi et al. A Side-Effect-Free Chemotactic-Antibacterial Wound Dressing for Programmatic Trapping, Killing of Bacteria, and Wound Repair. (2025) MATERIALS TODAY BIO 2590-0064 2590-0064 35
  6. Czernuszka Maisie R. et al. Bacteria–phage infection network structure and genomic defence system content predict efficacy of a phage therapy cocktail against Pseudomonas aeruginosa from chronic lung infections. (2025) PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B - BIOLOGICAL SCIENCES 0962-8436 1471-2970 380 1934
  7. * Colosi Ioana Alina et al. Beyond the Usual Suspects: Weeksella virosa as a Potential Human and Animal Pathogen. (2025) TROPICAL MEDICINE AND INFECTIOUS DISEASE 2414-6366 10 8 p. 210
  8. Scarrone Murissich Martina. Characterization and CRISPR-Cas9-based genome engineering of Acinetobacter baumannii and its phages. (2025)
  9. Shamsuzzaman Md et al. Characterization and genome analyses of the novel phages targeting extraintestinal Escherichia coli clones ST131 and ST410. (2025) INTERNATIONAL MICROBIOLOGY 1139-6709 1618-1905 28 6 2233-2245
  10. * Pană Adrian-Gabriel et al. Clonality and the Phenotype–Genotype Correlation of Antimicrobial Resistance in Acinetobacter baumannii Isolates: A Multicenter Study of Clinical Isolates from Romania. (2025) MICROORGANISMS 2076-2607 13 1
  11. Tu Jieying et al. Colanic acid-mediated phage resistance enhances virulence in high-risk global clone Escherichia coli ST410. (2025) PLOS PATHOGENS 1553-7366 1553-7374 21 12
  12. Liu Ziqiang et al. Efficacy of precisely tailored phage cocktails targeting carbapenem-resistant Acinetobacter baumannii reveals evolutionary trade-offs: a proof-of-concept study. (2025) EBIOMEDICINE 2352-3964 2352-3964 120
  13. * Daruka Lejla et al. ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro. (2025) NATURE MICROBIOLOGY 2058-5276 2058-5276 10 2 313-331
  14. Wei Li et al. Genome sequence of a lytic phage phi1_092060 targeting ST2 KL104-type Acinetobacter baumannii. (2025) MICROBIOLOGY RESOURCE ANNOUNCEMENTS 2576-098X 2576-098X 14 5
  15. Qin Jiayuan et al. Genome sequence of the broad-host-range phage phi1_092033 against Acinetobacter baumannii. (2025) MICROBIOLOGY RESOURCE ANNOUNCEMENTS 2576-098X 2576-098X 14 4
  16. Banerjee Basudha et al. Genomic insights into bacteriophages: a new frontier in AMR detection and phage therapy. (2025) BRIEFINGS IN FUNCTIONAL GENOMICS 2041-2649 2041-2657 24
  17. Zhao Xingtao et al. Harnessing Gut Microbiome–Brain–Liver Crosstalk: Novel Therapeutic Strategies for Metabolic Dysfunction‐Associated Steatotic Liver Disease. (2025) Medicine Bulletin 3065-2723 3065-2731 1 2 136-153
  18. Scarrone Martina et al. In silico and in vitro comparative analysis of 79 Acinetobacter baumannii clinical isolates. (2025) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 13
  19. Kharrat Lukeman et al. Large-Scale Genomic Analysis of CpG-Mediated Immunogenicity in Bacteriophages and a Novel Predictive Risk Index. (2025)
  20. Ding Baiyun et al. Mechanistic roles and therapeutic potential of bacteriophages in inflammatory gastrointestinal diseases. (2025) Microbiome Research Reports 2771-5965 4 4
  21. Ndayishimiye Libère et al. Molecular and functional characterization of cold-adaptive phage LPCS39 for effective control of Cronobacter sakazakii in refrigerated foods. (2025) FOOD RESEARCH INTERNATIONAL 0963-9969 1873-7145 227
  22. Ogunlaja Ahmed. Molecular Epidemiology and Phylodynamics of Emerging and Re-emerging Viral Infections: Implications for Surveillance and Control. (2025) INERNATIONAL JOURNAL OF RESEARCH PUBLICATION AND REVIEWS 3049-0103 6 2 2924-2941
  23. Tian Shen et al. Phage-mediated control of melioidosis in Southern China: molecular insights and therapeutic potential of N4-like viruses from Hainan. (2025) BMC MICROBIOLOGY 1471-2180
  24. Wang Yilin et al. Phage Therapy for Acinetobacter baumannii Infections: A Review on Advances in Classification, Applications, and Translational Roadblocks. (2025) ANTIBIOTICS 2079-6382 2079-6382 14 11
  25. Davey-Young Josephine M. et al. Phage Therapy to Treat Unresponsive Infections: a Primer for the Clinical Microbiology Laboratory Staff. (2025) CLINICAL MICROBIOLOGY NEWSLETTER 0196-4399 1873-4391 50 48-59
  26. Wang Xin. Potential And Challenges Of Phage Therapy: An Alternative Strategy In The Post-Antibiotic Era. (2025) Transactions on Materials, Biotechnology and Life Sciences 2960-2319 8 365-376
  27. Bröcker Felix et al. Potenziale der Bakteriophagentherapie in Deutschland: Evidenzlage und klinische Relevanz [Potential of bacteriophage therapy in Germany: evidence and clinical relevance]. (2025) BUNDESGESUNDHEITSBLATT-GESUNDHEITSFORSCHUNG-GESUNDHEITSSCHUTZ 1436-9990 1437-1588 68 6 608-616
  28. Zhong Pei et al. Precision microbial regulation: Strategies for modulating GIT microbiota for host health. (2025) iMetaOmics 2996-9506 2996-9514 2 1
  29. Ren Xuefang et al. Recent advances in phage-antibiotic combination therapy for bacterial infections [噬菌体与抗生素联合疗法在细菌性感染治疗中的研究进展 ]. (2025) WEISHENGWU XUEBAO / ACTA MICROBIOLOGICA SINICA 0001-6209 65 11 4780-4799
  30. Xing Jiabao et al. Revisiting therapeutic options against resistant klebsiella pneumoniae infection: Phage therapy is key. (2025) MICROBIOLOGICAL RESEARCH 0944-5013 1618-0623 293
  31. Chen Chong et al. Threat and Control of tet(X)-Mediated Tigecycline-Resistant Acinetobacter sp. Bacteria. (2025) FOODS 2304-8158 14 19
  32. Kan Leo Lai. A Decapsulated-cell-targeting Bacteriophage: Characterisation and Therapeutic Potential Against Acinetobacter baumannii. (2026)
  33. * Asbóth András et al. A global map of receptor-binding protein compatibility for the programmable design of Klebsiella and Acinetobacter phages. (2026)
  34. Zhou Zihe et al. Bacteriophage Therapy: Current Strategies and Future Perspectives. (2026) MEDCOMM 2688-2663 7 3
  35. Zhou Zihe et al. Biomaterial-driven innovations in phage therapy: current strategies and future perspectives. (2026) MICROBIOLOGICAL RESEARCH 0944-5013 1618-0623 302
  36. Islam Md Minarul et al. Comprehensive in silico analysis of Acinetobacter isolates from South Korea reveals genomic diversity, antimicrobial resistance, virulence factors, and evolutionary dynamics. (2026) GENES & GENOMICS 1976-9571 2092-9293 48 147-162
  37. Huang Yi-Hsuan et al. Improving thermostability of Acinetobacter baumannii phages during cold storage through infecting naïve bacterial hosts. (2026) PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY 1082-6068 1532-2297 56 1-6
  38. Brockhurst Michael A. et al. Realizing phage therapy in the UK. (2026) NATURE MICROBIOLOGY 2058-5276 2058-5276
  39. Ayele Abay A. et al. Reimagining Phage Therapy for MDR Pathogens: From Biobanks to Health System Integration—A Review. (2026) INFECTIOUS DISEASES AND THERAPY 2193-8229 2193-6382 15
  40. Liu Beimin et al. Single-Cell Raman Profiling Enables Rapid Precision Phage Therapy Against Multidrug-Resistant Hypervirulent Klebsiella pneumoniae. (2026)
  41. Abdraimova Narina et al. The Role of Genomics in Advancing and Standardising Bacteriophage Therapy. (2026) ANTIBIOTICS 2079-6382 2079-6382 15 1
  42. Zhou Zihe et al. The therapeutic potential of phage pT2784 against ST40-KL47 type Acinetobacter baumannii and bacterial fitness trade-offs. (2026) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 14
  43. Mishra Vaishnavi H. et al. The use of machine learning in facilitating antibiotic discovery: A narrative review. (2026) JOURNAL OF CLINICAL SCIENCES 2468-6859 2408-7408 23 1 46-52
  44. Chung Shimin Jasmine et al. Timely bespoke phage-antibiotic combination to treat refractory Pseudomonas aeruginosa mediastinitis and vascular graft infection. (2026) NATURE COMMUNICATIONS 2041-1723 17 1
  45. Malajczuk Chris J et al. Towards accurate artificial intelligence models for strain-level phage–host prediction. (2026) BRIEFINGS IN BIOINFORMATICS 1467-5463 1477-4054 27 1
6.
Turek, Cezary ; Olbei, Marton* ; Stirling, Tamas* ; Fekete, Gergely ; Tasnadi, Ervin ; Gul, Leila ; Bohar, Balazs ; Papp, Balazs ; Jurkowski, Wiktor ; Ari, Eszter ✉
mulea - an R package for enrichment analysis using multiple ontologies and empirical FDR correction
BMC BIOINFORMATICS 25 : 1 Paper: 334 , 13 p. (2024)
DOI Preprint DOI WoS REAL EDIT Scopus PubMed Egyéb URL
Központi kezelésű Közlemény:34718081 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
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Szakcikk (Folyóiratcikk) | Tudományos[34718081] [Egyeztetett]
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  1. Malko Maguje Masa et al. Dynamic hormone flux and gene-metabolite integration influence drought tolerance and tiller plasticity under drought conditions in wheat. (2025) PLANT PHYSIOLOGY AND BIOCHEMISTRY 0981-9428 1873-2690 230 p. 110698
  2. * Módos Dezső et al. Decoding non-coding SNPs: systems genomics modelling dissects the heterogeneity of IBD. (2026) MOLECULAR SYSTEMS BIOLOGY 1744-4292 1744-4292 22 2 259-280
7.
Daruka, L ; Márton, Simon Czikkely* ; Petra, Szili* ; Zoltán, Farkas* ; Dávid, Balogh ; Elvin, Maharramov ; Thu-Hien, Vu ; Levente, Sipos ; Botond, Dávid Vincze ; Gábor, Grézal et al.
Antibiotics of the future are prone to resistance in Gram-negative pathogens (2023)
Preprint DOI
Központi kezelésű Közlemény:34158052 Admin láttamozott Forrás Idéző Egyéb (Csak repozitóriumban hozzáférhető közlemény ) Tudományos
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  1. Martiny Hannah-Marie et al. ARGprofiler-a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets. (2024) BIOINFORMATICS 1367-4803 1460-2059 40 3
  2. Laborda Pablo et al. Preserving the efficacy of antibiotics to tackle antibiotic resistance. (2024) MICROBIAL BIOTECHNOLOGY 1751-7907 1751-7915 17 7
  3. Bognár Bence et al. Drug combinations targeting antibiotic resistance. (2025) npj Antimicrobials and Resistance 2731-8745 2 1
  4. Wu Z. et al. Unravelling AMR dynamics in the rumenofaecobiome: Insights, challenges and implications for One Health. (2025) INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS 0924-8579 1872-7913 66 1
8.
Gerber, Dániel ; Szeifert, Bea ; Székely, Orsolya ; Egyed, Balázs ; Gyuris, Balázs ; Giblin, Julia I. ; Horváth, Anikó ; Köhler, Kitti ; Kulcsár, Gabriella ; Kustár, Ágnes et al.
Interdisciplinary analyses of Bronze Age communities from Western Hungary reveal complex population histories
MOLECULAR BIOLOGY AND EVOLUTION 182 Paper: msad182 , 18 p. (2023)
DOI Preprint DOI WoS REAL Scopus PubMed Egyéb URL
Központi kezelésű Közlemény:33549439 Admin láttamozott Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
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Szakcikk (Folyóiratcikk) | Tudományos[33549439] [Admin láttamozott]
Nyilvános idéző összesen: 36, Független: 15, Függő: 21, Nem jelölt: 0
  1. * Kustár Ágnes et al. Bronzkori nő szobrászi arcrekonstrukciója Balatonkeresztúr-Réti-dűlő lelőhelyről. (2022) ANTHROPOLOGIAI KÖZLEMÉNYEK 0003-5440 2560-0753 63 3-16
  2. * Dicső Zoltán et al. Genomic refugium of pre-domestication lineages in the Bronze Age Carpathian Basin. (2023)
  3. * Borbély Noémi et al. High Coverage Mitogenomes and Y-Chromosomal Typing Reveal Ancient Lineages in the Modern-Day Székely Population in Romania. (2023) GENES 2073-4425 2073-4425 14 1
  4. * Meller Harald et al. Kinship, Sex, and Biological Relatedness : The contribution of archaeogenetics to the understanding of social and biological relations. 15. Mitteldeutscher Archäologentag vom 6. bis 8. Oktober 2022 in Halle (Saale). (2023) ISBN:9783969292594
  5. * Kiss Viktória et al. Lifeway narratives of a Bronze Age community from Balatonkeresztúr (Western Hungary) based on bioarchaeological analyses. (2023) Megjelent: Kinship, sex, and biological relatedness : the contribution of archaeogenetics to the understanding of social and biological re... pp. 233-248
  6. Melis Eszter. Northwest Transdanubia from the end of the Early Bronze Age until the Koszider Period: Reworked and extended PhD thesis abstract. (2023) DISSERTATIONES ARCHAEOLOGICAE 2064-4574 3 11 667-700
  7. * Noémi Borbély et al. Phylogenetic study of the Hungarian-speaking Baranja (Croatia) and Zobor region (Slovakia) populations: preprint. (2023)
  8. DUNNE JULIE et al. The Milky Way: Mobility and Economy at the Turn of the 3rd Millennium in Southern Central Europe. (2023) PROCEEDINGS OF THE PREHISTORIC SOCIETY 0079-497X 2050-2729 89 23-50
  9. * Bondár M. The Paradigm Shift in the Later Fourth Millennium BC: Why did Life Change in the Middle Copper Age in the Heartland of the Carpathian Basin?. (2023) ACTA ARCHAEOLOGICA ACADEMIAE SCIENTIARUM HUNGARICAE 0001-5210 1588-2551 74 1 1-21
  10. * Szeifert Bea et al. Tracing genetic connections of ancient Hungarians to the 6th-14th century populations of the Volga-Ural region (vol 31, pg 3266, 2022). (2023) HUMAN MOLECULAR GENETICS 0964-6906 1460-2083 32 12 2118-2118
  11. Youn JK. et al. A 3D printed esophageal atresia–tracheoesophageal fistula thorascopy simulator for young surgeons. (2024) SCIENTIFIC REPORTS 2045-2322 14 1
  12. Melis Eszter et al. A Gáta–Wieselburg-kultúra temetője és kiemelkedő síregyüttesei Nagycenk-Farkasverem lelőhelyről. (2024) ARCHAEOLOGIAI ÉRTESÍTŐ (BUDAPEST) 0003-8032 1589-486X 149 1 105-134
  13. * Gerber Dániel et al. Ancient genomes reveal Avar-Hungarian transformations in the 9th-10th centuries CE Carpathian Basin. (2024) SCIENCE ADVANCES 2375-2548 2375-2548 10 51
  14. Revesz Peter Z.. Archaeogenetic Data Mining Supports a Uralic–Minoan Homeland in the Danube Basin. (2024) INFORMATION (BASEL) 2078-2489 15 10
  15. * KISS V. ARCHEOMETRIAI MÓDSZEREK ALKALMAZÁSA A BRONZKOR KUTATÁSÁBAN MAGYARORSZÁGON: APPLICATION OF ARCHAEOMETRIC METHODS IN THE HUNGARIAN BRONZE AGE ARCHAEOLOGY. (2024) ARCHEOMETRIAI MŰHELY 1786-271X 21 4 313-338
  16. * Pásztor Emília et al. Archeometriai vizsgálatok a Sükösd–Árpás-dűlői bronzkori temetőből – előzetes eredmények [Archaeometric investigations of the Bronze Age cemetery at Sükösd–Árpás-dűlő – preliminary results]. (2024) ARCHEOMETRIAI MŰHELY 1786-271X 21 4 445-482
  17. * Borbély Noémi et al. Entwined Origins: Paternal and Maternal Genetic Legacies of Hungarian-Speaking Enclaves in the Carpathian Basin. (2024)
  18. Matthews Steven. Harald Meller, Johannes Krause, Wolfgang Haak & Roberto Risch (ed.). 2023. Kinship, sex, and biological relatedness: the contribution of archaeogenetics to the understanding of social and biological relations (Tagungen des Landesmuseum für Vorgeschichte Halle 28). Langenweißbach: Beier & Beran; 978-3-948618-66-7 hardback €59.. (2024) ANTIQUITY: A QUARTERLY REVIEW OF WORLD ARCHAEOLOGY 0003-598X 1745-1744 98 399 837-840
  19. Herrero-Corral Ana Mercedes. Kinship, Sex, and Biological Relatedness: The Contribution of Archaeogenetics to the Understanding of Social and Biological Relations. (2024) ARCHAEOLOGIA AUSTRIACA 0003-8008 1816-2959 108 294-297
  20. * Borbély Noémi et al. Phylogenetic insights into the genetic legacies of Hungarian-speaking communities in the Carpathian Basin. (2024) SCIENTIFIC REPORTS 2045-2322 14 1
  21. Garcia-Heras Jaime. The Discovery of Common Chromosome Aneuploidies with Medical Implications Through Innovative Analysis of Ancient DNA (aDNA).. (2024) JOURNAL OF THE ASSOCIATION OF GENETIC TECHNOLOGISTS 1523-7834 50 3 96-99
  22. * Amjadi Motahareh Ala et al. Ancient DNA indicates 3,000 years of genetic continuity in the Northern Iranian Plateau, from the Copper Age to the Sassanid Empire. (2025) SCIENTIFIC REPORTS 2045-2322 15 1
  23. * Szecsenyi-Nagy Anna et al. Ancient DNA reveals diverse community organizations in the 5th millennium BCE Carpathian Basin. (2025) NATURE COMMUNICATIONS 2041-1723 16 1 p. 1
  24. * Gnecchi-Ruscone Guido Alberto et al. Ancient genomes reveal trans-Eurasian connections between the European Huns and the Xiongnu Empire. (2025) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 0027-8424 1091-6490 122 9 p. 1
  25. Cox Samantha L. et al. Effects of ancestry, agriculture, and lactase persistence on the stature of prehistoric Europeans. (2025) CURRENT BIOLOGY 0960-9822 1879-0445 35 22 5654-5665.e3
  26. Gyucha A et al. Etched in Stone: The Kevermes Stone Stela From the Great Hungarian Plain. (2025) OPEN ARCHAEOLOGY 2300-6560 2300-6560 11 1
  27. * Gerber Dániel et al. Extended pre-domestication horse lineage survival in the Carpathian Basin. (2025) ACTA ARCHAEOLOGICA ACADEMIAE SCIENTIARUM HUNGARICAE 0001-5210 1588-2551 76 2 251-262
  28. * Cavazzuti Claudio et al. Isotope and archaeobotanical analysis reveal radical changes in mobility, diet and inequalities around 1500 BCE at the core of Europe. (2025) SCIENTIFIC REPORTS 2045-2322 15 1
  29. Piven Pavel V. et al. Problems of Linguistic-Archaeological and Paleogenetic Identification of the Minoans of the Neopalatial Period. (2025) Izvetsiya Altaiskii Gosudarstvennyi Universitet / The News of Altai State University 1561-9443 1561-9451 5 145 59-67
  30. Vondrovský Václav et al. Rethinking Key Transformations in the Neolithic and Bronze Age Central Europe: A Radiocarbon Modeling Approach. (2025) JOURNAL OF ARCHAEOLOGICAL RESEARCH 1059-0161 1573-7756
  31. Chobanov Todor et al. Slavs in the closet: computational genomic analysis reveals cryptic slavic signatures in the Avar Khaganate and their contribution to medieval Croatian population formation. (2025) FRONTIERS IN GENETICS 1664-8021 16
  32. * Kiss Viktória et al. Webes adatbázisok, adatelemzés és modellezés a régészeti kutatásban : Bronzkori társadalmi-gazdasági stratégiák a Közép-Duna vidéken: Digitális adatbázis. (2025) MAGYAR RÉGÉSZET 2416-0288 14 2 1-8
  33. Fibiger Linda et al. A large mass grave from the Early Iron Age indicates selective violence towards women and children in the Carpathian Basin. (2026) NATURE HUMAN BEHAVIOUR 2397-3374 2397-3374
  34. * Özdemir Yusuf Can et al. Ancient human genomes from the Altai region reveal population continuity and shifts in the 4th-12th centuries. (2026) bioRxiv 2692-8205
  35. Isacchini Giulio et al. Inferring Migration Networks with Time-Lagged F2 Statistics. (2026) bioRxiv 2692-8205
  36. * Hajdu Tamás et al. Murder in cold blood? Forensic and bioarchaeological identification of the skeletal remains of Béla, Duke of Macsó (c. 1245–1272). (2026) FORENSIC SCIENCE INTERNATIONAL-GENETICS 1872-4973 1878-0326 81 p. 103381
9.
Kiss, Viktória ; Gerber, Dániel ; Szeifert, Bea ; Székely, Orsolya ; Egyed, Balázs ; Gyuris, Balázs ; I. Giblin, Julia ; Horváth, Anikó ; Palcsu, László ; Köhler, Kitti et al.
Lifeway narratives of a Bronze Age community from Balatonkeresztúr (Western Hungary) based on bioarchaeological analyses
In: Meller, Harald; Krause, Johannes; Haak, Wolfgang; Risch, Roberto (szerk.) Kinship, sex, and biological relatedness : the contribution of archaeogenetics to the understanding of social and biological relations : 15. Mitteldeutscher Archäologentag vom 6. bis 8. Oktober 2022 in Halle (Saale)
Halle (Saale), Németország : Landesamt für Denkmalpflege und Archäologie Sachsen-Anhalt, Landesmuseum für Vorgeschichte (2023) 344 p. pp. 233-248. , 15 p.
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  1. Sánta Gábor. Ceramic Depositions, Ritual Features, and Irregular Burials of the Tumulus Culture in Hungary. (2025) DISSERTATIONES ARCHAEOLOGICAE 2064-4574 3 13 381-411
10.
Péter, Bacsur ; Mariann, Rutka* ; András, Asbóth ; Tamás, Resál ; Kata, Szántó ; Boldizsár, Jójárt ; Anita, Bálint ; Eszter, Ari ; Walliyulahi, Ajibola ; Bálint, Kintses et al.
Effects of bowel cleansing on the composition of the gut microbiota in inflammatory bowel disease patients and healthy controls
THERAPEUTIC ADVANCES IN GASTROENTEROLOGY 16 Paper: 17562848231174298 , 13 p. (2023)
DOI WoS REAL Scopus PubMed SZTE Publicatio
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Szakcikk (Folyóiratcikk) | Tudományos[34014839] [Egyeztetett]
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  1. Gomes N. et al. Uncovering the effects of Giardia duodenalis on the balance of DNA viruses and bacteria in children's gut microbiota. (2023) ACTA TROPICA 0001-706X 1873-6254 247
  2. Clayton Charlotte et al. Bowel preparation-induced changes in the gut environment facilitate pathogen and pathobiont colonization. (2024)
  3. Clayton Charlotte. Investigating the impact of osmotic bowel preparation on the gastrointestinal microenvironment, the gut microbiota, and the susceptibility to pathogen and pathobiont colonization and translocation. (2024)
  4. Yingganga Xu et al. 炎症性肠病患者结肠镜检查肠道准备的研究进展 [Research progress on bowel preparation for colonoscopy in patients with inflammatory bowel disease]. (2024) LINCHUANG HUICUI / CLINICAL FOCUS 1004-583X 39 11 1035-1039
  5. Hou S. et al. Advances in Fecal Microbiota Transplantation for Gut Dysbiosis-Related Diseases. (2025) ADVANCED SCIENCE 2198-3844 12 13
  6. Jo Hyeong Ho et al. Alteration in gut microbiota after colonoscopy: proposed mechanisms and the role of probiotic interventions. (2025) CLINICAL ENDOSCOPY 2234-2400 2234-2443 58 1 25-39
  7. Naragatti Siddappa et al. Comparative Analysis of Colon Cleansing: Effects of the Yogic Technique Shankhaprakshala vs. Naturopathic Enema. (2025) INTERNATIONAL JOURNAL OF SCIENCE AND RESEARCH 2319-7064 14 8 475-482
  8. Ghouri Yezaz A. et al. Free-living food intake and repopulation of the gut microbiota after a health-screening colonoscopy. (2025)
  9. Lledós Miquel et al. Influence of the Gut Microbiota on Acute Ischemic Stroke Functional Outcomes at Three Months. (2025) EUROPEAN JOURNAL OF NEUROLOGY 1351-5101 1468-1331 32 7
  10. Navarro-Sánchez Adrián et al. Is the oral pathogen, Porphyromona gingivalis, associated to colorectal cancer?: a systematic review. (2025) BMC CANCER 1471-2407 1471-2407 25 1
  11. Even Aniek et al. Measurements of redox balance along the gut using a miniaturized ingestible sensor. (2025) NATURE ELECTRONICS 2520-1131 2520-1131 8 9 856-870
  12. Ma Huimin et al. Microbial profile of the appendix niche in acute appendicitis: a novel sampling approach. (2025) FEBS OPEN BIO 2211-5463 2211-5463 15 12 2001-2020
  13. Ghouri Yezaz A. et al. Repopulation of the gut microbiota after a screening colonoscopy. (2025) PLOS ONE 1932-6203 20 9
  14. Liu Derek et al. Surveillance colonoscopy in patients with quiescent inflammatory bowel disease is associated with increased post-procedure steroid prescriptions: a national database study. (2025)
  15. Hu Jiabin et al. The Effects and Adverse Reactions of Different Bowel Cleansers on Gut Microbiota After Colonoscopy. (2025) TURKISH JOURNAL OF GASTROENTEROLOGY 1300-4948 2148-5607 36 10 620-628
  16. Blesl Andreas et al. The Fecal Microbiome of IBD Patients Is Less Divertible by Bowel Preparation Compared to Healthy Controls: Results From a Prospective Study. (2025) INFLAMMATORY BOWEL DISEASES 1078-0998 1536-4844 31 7 2007-2018
  17. Clayton Charlotte A. et al. In mouse and in vitro models, bowel preparation promotes pathogen colonization, translocation, and exacerbation of inflammation. (2026) CELL REPORTS MEDICINE 2666-3791 2666-3791 7 1
11.
Sturm, Ádám ; Saskői, Éva ; Hotzi, Bernadette ; Tarnóci, Anna ; Barna, János ; Bodnár, Ferenc ; Sharma, Himani ; Kovács, Tibor ; Ari, Eszter ; Weinhardt, Nóra et al.
Downregulation of transposable elements extends lifespan in Caenorhabditis elegans
NATURE COMMUNICATIONS 14 : 1 Paper: 5278 , 18 p. (2023)
DOI SZTAKI REAL WoS EDIT Scopus PubMed Egyéb URL
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Nyilvános idéző összesen: 38 | Független: 33 | Függő: 5 | Nem jelölt: 0 | WoS jelölt: 22 | Scopus jelölt: 10 | WoS/Scopus jelölt: 22 | DOI jelölt: 28
Szakcikk (Folyóiratcikk) | Tudományos[34119363] [Egyeztetett]
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  1. * Sturm Ádám et al. N6-Methyladenine Progressively Accumulates in Mitochondrial DNA during Aging. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 19
  2. Koch Zane et al. Somatic mutation as an explanation for epigenetic aging. (2023)
  3. * Kovács Dániel et al. Age‐dependent heat shock hormesis to HSF ‐1 deficiency suggests a compensatory mechanism mediated by the unfolded protein response and innate immunity in young Caenorhabditis elegans. (2024) AGING CELL 1474-9718 1474-9726 23 10
  4. * Vellai Tibor. Az öregedési folyamat mechanizmusa – Orvosi vonatkozások. (2024) IDŐSGYÓGYÁSZAT 2498-8057 8 3-4 p. 78
  5. Schoenfeldt Lucas. Developing safe and efficient cellular reprogramming approaches for the amelioration of age-associated phenotypes. (2024)
  6. Bracken Ronan Charles. Dissecting Mechanisms of Proinflammatory Transcriptional Control in the Vascular Endothelium. (2024)
  7. Mariner Blaise L. et al. DNA methylation of transposons pattern aging differences across a diverse cohort of dogs from the Dog Aging Project. (2024)
  8. Meng Wei-Ying et al. Epigenetic marks or not? The discovery of novel DNA modifications in eukaryotes. (2024) JOURNAL OF BIOLOGICAL CHEMISTRY 0021-9258 1083-351X 300 4
  9. Tsai Yi-Ting et al. Expression of Most Retrotransposons in Human Blood Correlates with Biological Aging. (2024)
  10. Chen Hao-Hong et al. Fucoidan-Copper Nanoparticles to Potentiate Synergistic Cancer Cell Cuproptosis and Immunotherapy. (2024)
  11. Kose Cansu et al. Genome-wide analysis of transcription-coupled repair reveals novel transcription events in Caenorhabditis elegans. (2024) PLOS GENETICS 1553-7390 1553-7404 20 7 p. e1011365
  12. Kose Cansu. Genome-Wide Nucleotide Excision Repair in Caenorhabditis elegans. (2024)
  13. Boyko Olexiy G.. NEOWEISMANNISM AS A POSSIBLE PARADIGM OF THE BIOLOGY OF AGING (By a cheerful pen about the most terrible phenomenon of our existence). (2024)
  14. Martínez Ugalde Isaac. Parasites inside parasites: transposable element evolution and regulation by exWAGO in Strongylida nematodes. (2024)
  15. Hoogerland Loles et al. Research on Synthetic Genomes - Report - Government.nl. (2024)
  16. Patel Mahammed Zaid et al. Somatic piRNA and PIWI-mediated post-transcriptional gene regulation in stem cells and disease. (2024) FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY 2296-634X 2296-634X 12
  17. Lovászy László Gábor. The Challenges of EU Social Policy in the Clutter of Human Rights : What Will the (Bio)technological Singularity of the 21st Century Bring by 2030?. (2024) ISBN:9789636530624 9789636530617 9789636530631
  18. Feng Y. et al. Widespread transposable element dysregulation in human aging brains with Alzheimer's disease. (2024) ALZHEIMERS & DEMENTIA 1552-5260 1552-5279 20 11 7495-7517
  19. Dai Dadong et al. 6mA demethylase Mi-NMAD-1 modulates nematode development and parasitism through the transcription factor Mi-nhr-118. (2025) bioRxiv 2692-8205
  20. Talevi Valentina et al. Age and Sex Effects on Blood Retrotransposable Element Expression Levels: Findings From the Population-Based Rhineland Study. (2025) AGING CELL 1474-9718 1474-9726 24 8 p. &
  21. Zhang Yun et al. Aging impairs the antiviral defense in Caenorhabditis elegans due to loss of DRH-1/RIG-I deSUMOylation by ULP-4/SENP7. (2025) EMBO REPORTS 1469-221X 1469-3178
  22. Greer Eric Lieberman et al. Chromatin and epigenetics in aging biology. (2025) GENETICS 0016-6731 1943-2631 230 1
  23. Godden Alice M. et al. Environmentally induced variation in sperm sRNAs is linked to gene expression and transposable elements in zebrafish offspring. (2025) HEREDITY 0018-067X 1365-2540 135
  24. Cavalier Alyssa N. et al. Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer’s disease. (2025) GEROSCIENCE: OFFICIAL JOURNAL OF THE AMERICAN AGING ASSOCIATION (AGE) 2509-2715 2509-2723 47
  25. Kizil Aslıhan et al. EPİGENETİK VE YAŞLANMA. (2025) Bartın University International Journal of Natural and Applied Sciences 2667-5048 8 2 387-401
  26. Merenciano Miriam et al. Exploring the role of transposable elements to sex gap in longevity in Drosophila species. (2025)
  27. Tangili Marianthi. From nest to eternal rest: Molecular mechanisms underlying life-history variation in avian species. (2025)
  28. Duxbury Elizabeth M. et al. Lifespan-extending downregulation of insulin signalling reduces germline mutation load. (2025) bioRxiv 2692-8205
  29. Kazzazy Latifa et al. Noncanonical Nucleotides in the Genome Around the Maternal‐Zygotic Transition. (2025) JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 1552-5007 1552-5015
  30. * Dusa Fanny Cecília et al. Nutrition and DNA Methylation: How Dietary Methyl Donors Affect Reproduction and Aging. (2025) DIETETICS 2674-0311 4 3
  31. Huang Jiale et al. PiRNA hsa_pir_018849 promotes the proliferation and invasion of osteosarcoma cells by regulating the stability of CCN5 mRNA. (2025) JOURNAL OF ORTHOPAEDIC SURGERY AND RESEARCH 1749-799X 1749-799X 20 1
  32. Hwang Seungjae et al. Recent progress in regulation of aging by non-coding RNAs in Caenorhabditis elegans. (2025) ANIMAL CELLS AND SYSTEMS 1976-8354 2151-2485 29 1 665-675
  33. Harris Isaac et al. Selection on the epigenome: small RNAinheritance in animal evolution. (2025) TRENDS IN GENETICS 0168-9525 1362-4555 41 9 804-816
  34. Morandini Francesco et al. Transposable element 5mC methylation state of blood cells predicts age and disease. (2025) NATURE AGING 2662-8465 5 2 p. &
  35. * Hotzi Bernadette et al. Transposable element methylation tracks age: Transposable elements. (2025) NATURE AGING 2662-8465 5 2 179-181
  36. Hernandez-Rojas Bairon et al. Changes in transposable elements expression in male and female mice liver throughout aging. (2026) GEROSCIENCE: OFFICIAL JOURNAL OF THE AMERICAN AGING ASSOCIATION (AGE) 2509-2715 2509-2723 48
  37. Steiger Mara et al. The DNA methylation landscape of naturally short-lived killifish. (2026) SCIENTIFIC REPORTS 2045-2322 16 1
  38. Lemus Aaron J. et al. The interplay of epigenetic remodelling and transposon-mediated genomic instability in ageing and longevity. (2026) OPEN BIOLOGY 2046-2441 16 1
12.
Ari, Eszter ; Vásárhelyi, Bálint Márk ; Kemenesi, Gábor ; Tóth, Gábor Endre ; Zana, Brigitta ; Somogyi, Balázs ; Lanszki, Zsófia ; Röst, Gergely ; Jakab, Ferenc ; Papp, Balázs ✉ et al.
A Single Early Introduction Governed Viral Diversity in the Second Wave of SARS-CoV-2 Epidemic in Hungary
VIRUS EVOLUTION 8 : 2 Paper: veac069 , 12 p. (2022)
DOI WoS REAL EDIT Scopus PubMed Egyéb URL SZTE Publicatio
Központi kezelésű Közlemény:33040340 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
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Szakcikk (Folyóiratcikk) | Tudományos[33040340] [Egyeztetett]
Nyilvános idéző összesen: 7, Független: 4, Függő: 3, Nem jelölt: 0
  1. Dennler Olivier. [Characterization in functional modules of ADAMTS-TSL proteins, by phylogeny approaches]. (2022)
  2. * Sayyar Golsa et al. Epidemic Patterns of Emerging Variants with Dynamical Social Distancing. (2023) Megjelent: Trends in Biomathematics: Modeling Epidemiological, Neuronal, and Social Dynamics pp. 215-232
  3. * Zeghbib S. et al. The importance of equally accessible genomic surveillance in the age of pandemics. (2023) BIOLOGIA FUTURA 2676-8615 2676-8607 74 1-2 81-89
  4. * Lanszki Zsófia. A canine distemper virus kutatás módszertanának fejlesztése Nanopore technológia segítségével, monitoring ésgenomszekvenálás céljából =Advancing canine distemper virus research through Nanopore Technology for surveillance and genome sequencing. (2024)
  5. Rice Alan M. et al. SARS-CoV-2 introductions to the island of Ireland: a phylogenetic and geospatiotemporal study of infection dynamics. (2024) GENOME MEDICINE 1756-994X 1756-994X 16 1
  6. Hamar Ágoston László. A COVID-19 betegség patomechanizmusának és lefolyásának vizsgálata: epidemiológiai, diagnosztikai, klinikai és intenzív osztályos vonatkozások. (2025)
  7. Jones Leandro R.. Intra-host variability of SARS-CoV-2: Patterns, causes and impact on COVID-19. (2025) VIROLOGY 0042-6822 1096-0341 1089-862X 603
13.
Csabai, Luca ; Fazekas, Dávid* ; Kadlecsik, Tamás* ; Szalay-Bekő, Máté ; Bohár, Balázs ; Madgwick, Matthew ; Módos, Dezső ; Ölbei, Márton ; Gul, Lejla ; Sudhakar, Padhmanand et al.
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks
NUCLEIC ACIDS RESEARCH 50 : D1 pp. D701-D709. , 9 p. (2022)
DOI WoS REAL EDIT Scopus PubMed Teljes dokumentum Egyéb URL
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Szakcikk (Folyóiratcikk) | Tudományos[32352175] [Egyeztetett]
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  1. Borgthor Petursson. Analysis of the Understudied Parts of the Phospho- Signalome Using Machine Learning Methods. (2021)
  2. Menestrina Luca et al. An unsupervised computational pipeline identifies potential repurposable drugs to treat Huntington's disease and multiple sclerosis. (2022) Artificial Intelligence in the Life Sciences 2667-3185 2667-3185 2
  3. * Gul Lejla. Bioinformatic pipelines to reconstruct and analyse intercellular and hostmicrobe interactions affecting epithelial signalling pathways. (2022)
  4. Collin Catherine Bjerre et al. Computational Models for Clinical Applications in Personalized Medicine-Guidelines and Recommendations for Data Integration and Model Validation. (2022) JOURNAL OF PERSONALIZED MEDICINE 2075-4426 12 2
  5. Hosseini-Gerami Layla. Using biological and chemical information to improve understanding of drug mechanism of action on the systems-level. (2022)
  6. Palshikar Mukta G.. Executable Models of Signaling Pathways Built Using Omics Data. (2023)
  7. Flobak Åsmund et al. Fine tuning a logical model of cancer cells to predict drug synergies: combining manual curation and automated parameterization. (2023) FRONTIERS IN SYSTEMS BIOLOGY 2674-0702 3
  8. Najm Matthieu. Identification of new therapeutic targets for cystic fibrosis using systems biology and chemogenomics approaches. (2023)
  9. Kumar Shivam et al. konnect2prot: a web application to explore the protein properties in a functional protein–protein interaction network. (2023) BIOINFORMATICS 1367-4803 1367-4811 39 1
  10. Hosseini-Gerami L. et al. MAVEN: compound mechanism of action analysis and visualisation using transcriptomics and compound structure data in R/Shiny. (2023) BMC BIOINFORMATICS 1471-2105 1471-2105 24 1
  11. Misetic Hrvoje et al. Mechanistic insights into the interactions between cancer drivers and the tumour immune microenvironment. (2023) GENOME MEDICINE 1756-994X 1756-994X 15 1
  12. Pandey A.K. et al. Network medicine: an approach to complex kidney disease phenotypes. (2023) NATURE REVIEWS NEPHROLOGY 1759-5061 1759-507X 19 463-475
  13. Hasman Maria. Resolving Inflammatory Networks in Atherosclerosis Using Proteomics and Bioinformatics. (2023)
  14. Lo Surdo Prisca et al. SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update. (2023) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 51 D1 D631-D637
  15. Jaskiewicz Katarzyna et al. The Impaired Wound Healing Process Is a Major Factor in Remodeling of the Corneal Epithelium in Adult and Adolescent Patients With Keratoconus. (2023) INVESTIGATIVE OPHTHALMOLOGY AND VISUAL SCIENCE 0146-0404 1552-5783 64 2
  16. Camele Genaro. Aceleración del proceso de selección de características en entornos Big Data. (2024)
  17. Musilova Jana et al. Augusta: From RNA-Seq to Gene Regulatory Networks and Boolean Models. (2024) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 2001-0370 2001-0370 23 783-790
  18. * Csabai Luca et al. AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation. (2024) AUTOPHAGY 1554-8627 1554-8635 20 1 188-201
  19. Iannuccelli Marta et al. Curation of causal interactions mediated by genes associated with autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental disorders. (2024) MOLECULAR PSYCHIATRY 1359-4184 1476-5578 29 186-196
  20. Martini Leonardo et al. Detecting and dissecting signaling crosstalk via the multilayer network integration of signaling and regulatory interactions. (2024) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 52 1
  21. Wang George Yuanji et al. GAN-TAT: A Novel Framework Using Protein Interaction Networks in Druggable Gene Identification. (2024)
  22. Menestrina Luca et al. Knowledge Graph and Machine Learning Help the Research of Drugs Aimed at Neurological Diseases. (2024)
  23. Hammad Reham et al. Leukemic B cells expression of CD200 and Leukocyte-associated immunoglobulin-like receptor-1 (LAIR-1, CD305) in Chronic Lymphocytic Leukemia patients in relation to Tregs Frequency. (2024) PATHOLOGY RESEARCH AND PRACTICE 0344-0338 1618-0631 263
  24. * Turek Cezary et al. mulea - an R package for enrichment analysis using multiple ontologies and empirical FDR correction. (2024) BMC BIOINFORMATICS 1471-2105 1471-2105 25 1
  25. Song Junrong et al. Privacy-Preserving Identification of Cancer Subtype-Specific Driver Genes Based on Multigenomics Data with Privatedriver. (2024) JOURNAL OF COMPUTATIONAL BIOLOGY 1066-5277 1557-8666 31 2 99-116
  26. Anderson Oliver F. et al. ProteinWeaver: A Webtool to Visualize Ontology-Annotated Protein Networks. (2024)
  27. * Hamar Renáta et al. The zebrafish (Danio rerio) snoRNAome. (2024)
  28. Šimon Martin et al. A bioinformatics toolbox to prioritize causal genetic variants in candidate regions. (2025) TRENDS IN GENETICS 0168-9525 1362-4555 41 1 33-46
  29. Nussinov R. et al. Allostery in Disease: Anticancer Drugs, Pockets, and the Tumor Heterogeneity Challenge. (2025) JOURNAL OF MOLECULAR BIOLOGY 0022-2836 1089-8638 437 20
  30. * Keresztes D. et al. Cancer drug resistance as learning of signaling networks. (2025) BIOMEDICINE & PHARMACOTHERAPY 0753-3322 1950-6007 183
  31. Yavuz Bengi Ruken et al. Discovering anticancer drug target combinations via network-informed signaling-based approach. (2025) COMMUNICATIONS MEDICINE 2730-664X 2730-664X 5 1
  32. Song Junrong et al. DriverSub-SVM: a machine learning approach for cancer subtype classification by integrating patient-specific and global driver genes. (2025) BMC BIOINFORMATICS 1471-2105 1471-2105 26 1
  33. An Xiaoyang et al. Exploring the Regulatory Effect of Hydroxytyrosol on Ovarian Inflammaging Through Autophagy-Targeted Mechanisms: A Bioinformatics Approach. (2025) NUTRIENTS 2072-6643 17 9 p. 1421
  34. Khan Abdul Arif et al. Host-Pathogen Interaction Databases: Tools for Rapid Understanding of Microbial Pathogenesis. (2025) WIRES MECHANISMS OF DISEASE 2692-9368 2692-9368 17 1
  35. Kumar Shivam et al. konnect2prot 2.0: Integrating advanced analytical tools for deeper understanding of protein properties in a functional protein-protein interaction network. (2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 2001-0370 2001-0370 27 3036-3044
  36. Basto Piamonte Edgar. Modelling cellular communication networks to understand the regulatory drivers of disease. (2025)
  37. Nasare Divya et al. Phytoconstituents and Immunological Responses in Tuberculosis: Insights Into Network Pharmacology. (2025) CHEMISTRY & BIODIVERSITY 1612-1872 1612-1880 22
  38. Mokhtar Entsar R. et al. The Association of Toll-like Receptor-9 Gene Single-Nucleotide Polymorphism and AK155(IL-26) Serum Levels with Chronic Obstructive Pulmonary Disease Exacerbation Risk: A Case-Controlled Study with Bioinformatics Analysis. (2025) BIOMEDICINES 2227-9059 13 3 p. 613
  39. * Hamar Renáta et al. The zebrafish ( Danio rerio ) snoRNAome. (2025) NAR GENOMICS AND BIOINFORMATICS 2631-9268 7 1
  40. Kim J. et al. Transcription factors and hormone receptors: Sex‑specific targets for cancer therapy (Review). (2025) ONCOLOGY LETTERS 1792-1074 1792-1082 29 2
  41. Kong JungHo et al. Translating clinical gene sequencing into a foundational representation of tumor subtype. (2025)
  42. Li You-hong et al. MO-DMLHM: Multi-objective dynamic hypergraph modeling for cross-layer community detection in organizational networks. (2026) INFORMATION SCIENCES 0020-0255 1872-6291 739 p. 123170
  43. * Kerestély Márk et al. Modulation of Network Plasticity Opens Novel Therapeutic Possibilities in Cancer, Diabetes, and Neurodegeneration. (2026) ADVANCED SCIENCE 2198-3844 13 12
  44. * Türei Dénes et al. OmniPath: integrated knowledgebase for multi-omics analysis. (2026) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 54 D1 D652-D660
  45. Lo Surdo Prisca et al. SIGNOR 4.0: the 2025 update with focus on phosphorylation data. (2026) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 54 D1 D682-D690
  46. * Kerestély Márk et al. System level network data and models attack cancer drug resistance. (2026) BRITISH JOURNAL OF PHARMACOLOGY 0007-1188 1476-5381 183 8 1640-1652
14.
Liska, Orsolya ; Bohár, Balázs ; Hidas, András ; Korcsmáros, Tamás ; Papp, Balázs ; Fazekas, Dávid ; Ari, Eszter ✉
TFLink: an integrated gateway to access transcription factor–target gene interactions for multiple species
DATABASE-JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2022 Paper: baac083 , 8 p. (2022)
DOI WoS REAL EDIT Scopus PubMed Egyéb URL
Központi kezelésű Közlemény:33101945 Admin láttamozott Forrás Folyóiratcikk (Szakcikk ) Tudományos
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Szakcikk (Folyóiratcikk) | Tudományos[33101945] [Admin láttamozott]
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  1. Nersisyan Stepan et al. ECM–Receptor Regulatory Network and Its Prognostic Role in Colorectal Cancer. (2021) FRONTIERS IN GENETICS 1664-8021 12 p. 782699
  2. Chrysinas Panagiotis. Applications of Latent Representation Learning in Omics Data Integration and Prediction. (2023)
  3. Ranjan Kishu et al. Cellular Dynamics of Fadd in the Regulation of Cancer and Inflammatory Diseases. (2023)
  4. Takayama Y. et al. Deciphering the Molecular Mechanisms of Autonomic Nervous System Neuron Induction through Integrative Bioinformatics Analysis. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 10
  5. Chen Winston et al. DeepROCK: Error-controlled interaction detection in deep neural networks. (2023)
  6. Tooley K.B. et al. Differential usage of DNA modifications in neurons, astrocytes, and microglia. (2023) EPIGENETICS & CHROMATIN 1756-8935 1756-8935 16 1
  7. Wu Yang-Han et al. Knowledge graph embedding for profiling the interaction between transcription factors and their target genes. (2023) PLOS COMPUTATIONAL BIOLOGY 1553-734X 1553-7358 19 6 p. e1011207
  8. Yoon Jun Ho et al. Learning gene networks under SNP perturbation using SNP and allele-specific expression data. (2023)
  9. Takahashi Fumiya. Mechanisms of sex-specific construction of skeletal muscle via the adrenal cortex. (2023)
  10. Siddiqui T. et al. Nerve growth factor receptor (Ngfr) induces neurogenic plasticity by suppressing reactive astroglial Lcn2/Slc22a17 signaling in Alzheimer’s disease. (2023) NPJ REGENERATIVE MEDICINE 2057-3995 8 1
  11. Ezeriņa D. et al. Peroxiredoxin-1 is an H2O2 safe-guard antioxidant and signalling enzyme in M1 macrophages. (2023) ADVANCES IN REDOX RESEARCH 2667-1379 2667-1379 9
  12. Mandal Sudip. Reverse Engineering of Regulatory Networks. (2023) ISBN:9781071634615
  13. Devos H. et al. Reviewing the Regulators of COL1A1. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 12
  14. Indelicato E. et al. Skeletal muscle proteome analysis underpins multifaceted mitochondrial dysfunction in Friedreich’s ataxia. (2023) FRONTIERS IN NEUROSCIENCE 1662-4548 1662-453X 17
  15. Holguín Jorge Andrés. Widespread alteration of protein autoinhibition in human cancers. (2023)
  16. Tan Wei Liang et al. An association weight matrix identified biological pathways associated with bull fertility traits in a multi‐breed population. (2024) ANIMAL GENETICS 0268-9146 1365-2052 55 4 495-510
  17. Sangree Annabel K. et al. A novel iPSC model of Bryant-Li-Bhoj neurodevelopmental syndrome demonstrates the role of histone H3.3 in neuronal differentiation and maturation. (2024)
  18. * Csabai Luca et al. AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation. (2024) AUTOPHAGY 1554-8627 1554-8635 20 1 188-201
  19. Chrysinas Panagiotis et al. Cell- and tissue-specific glycosylation pathways informed by single-cell transcriptomics. (2024) NAR GENOMICS AND BIOINFORMATICS 2631-9268 6 4 p. lqae169
  20. Ranjan Kishu et al. Cellular Dynamics of Fas-Associated Death Domain in the Regulation of Cancer and Inflammation. (2024) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 25 6 p. 3228
  21. Franklin Ellis et al. Cluefish: mining the dark matter of transcriptional data series with over-representation analysis enhanced by aggregated biological prior knowledge. (2024)
  22. Muley V.Y.. Deep Learning for Predicting Gene Regulatory Networks: A Step-by-Step Protocol in R. (2024) METHODS IN MOLECULAR BIOLOGY 1064-3745 1940-6029 2719 265-294
  23. Henze Henriette et al. Denervation alters the secretome of myofibers and thereby affects muscle stem cell lineage progression and functionality. (2024) NPJ REGENERATIVE MEDICINE 2057-3995 9 1
  24. Takahashi Fumiya et al. Development of sexual dimorphism of skeletal muscles through the adrenal cortex, caused by androgen-induced global gene suppression. (2024) CELL REPORTS 2639-1856 2211-1247 43 2 p. 113715
  25. Lucchi Geraldine et al. Effects of psychological stress on the emission of volatile organic compounds from the skin. (2024) SCIENTIFIC REPORTS 2045-2322 14 1
  26. Chen Winston et al. Error-controlled non-additive interaction discovery in machine learning models. (2024)
  27. Papa N. G. et al. Exploring the molecular basis of diapause I induction in the annual killifish Garcialebias charrua: a transcriptomic approach. (2024) ENVIRONMENTAL BIOLOGY OF FISHES 0378-1909 1573-5133 107 6 693-717
  28. Kratochvilova Adela et al. FasL impacts Tgfb signaling in osteoblastic cells. (2024) Cells and Development 2667-291X 2667-2901 179
  29. Buzzao Davide. From multi-omics data to global association networks : Application to disease module finding and pathway analysis. (2024)
  30. Buzzao Davide et al. FunCoup 6: advancing functional association networks across species with directed links and improved user experience. (2024) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962
  31. Iori S. et al. Generation and characterization of cytochrome P450 3A74 CRISPR/Cas9 knockout bovine foetal hepatocyte cell line (BFH12). (2024) BIOCHEMICAL PHARMACOLOGY 0006-2952 1873-2968 224
  32. Muncie-Vasic Jonathon M. et al. Heart tube morphogenesis is regulated by segment-specific gene regulatory networks controlled by MEF2C. (2024)
  33. Huyghebaert J. et al. Identification of a DLG3 stop mutation in the MRX20 family. (2024) EUROPEAN JOURNAL OF HUMAN GENETICS 1018-4813 1476-5438 32 3 317-323
  34. Mishra Arpit et al. Identification of functional enhancer variants associated with type I diabetes in CD4+ T cells. (2024) FRONTIERS IN IMMUNOLOGY 1664-3224 1664-3224 15 p. 1387253
  35. Panni S. et al. Integrated Analysis of microRNA Targets Reveals New Insights into Transcriptional-Posttranscriptional Regulatory Cross-Talk. (2024) PREPRINTS 2310-287X p. 2024120845
  36. Mulero-Hernández Juan et al. Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation. (2024) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 52 15
  37. Bharat Ankit et al. Integrative single cell analysis to decode transcriptomic heterogeneity in pulmonary fibrosis across diverse pathologies. (2024)
  38. Casal J. Ignacio et al. Loss of cadherin 17 downregulates LGR5 expression, stem cell properties and drug resistance in metastatic colorectal cancer cells. (2024)
  39. Duangjan Chatrawee et al. Loss of WDR23 proteostasis impacts mitochondrial homeostasis in the mouse brain. (2024) CELLULAR SIGNALLING 0898-6568 1873-3913 116
  40. Ochoa Soledad et al. M2 Macrophages are Major Mediators of Germline Risk of Endometriosis and Explain Pleiotropy with Comorbid Traits. (2024) bioRxiv 2692-8205
  41. Liu Xianhui et al. Mealtime alters daily rhythm in nuclear O-GlcNAcome to regulate hepatic gene expression. (2024)
  42. Checcoli Andrea. Modeling of immunogenic cell death. (2024)
  43. Florio Angela et al. Monolayer culture alters EGFR inhibitor response through abrogation of microRNA-mediated feedback regulation. (2024) SCIENTIFIC REPORTS 2045-2322 14 1
  44. Aguerralde-Martin Maider et al. MORE interpretable multi-omic regulatory networks to characterize phenotypes. (2024)
  45. * Turek Cezary et al. mulea - an R package for enrichment analysis using multiple ontologies and empirical FDR correction. (2024) BMC BIOINFORMATICS 1471-2105 1471-2105 25 1
  46. Lee S. et al. Multi-layered knowledge graph neural network reveals pathway-level agreement of three breast cancer multi-gene assays. (2024) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 2001-0370 2001-0370 23 1715-1724
  47. Segura-Ortiz Adrián et al. Multi-objective context-guided consensus of a massive array of techniques for the inference of Gene Regulatory Networks. (2024) COMPUTERS IN BIOLOGY AND MEDICINE 0010-4825 1879-0534 179 p. 108850
  48. Weng Yao et al. O ‐ GlcNAcylation regulates osteoblast differentiation through the morphological changes in mitochondria, cytoskeleton, and endoplasmic reticulum. (2024) BIOFACTORS 0951-6433 1872-8081
  49. Shenoy U. Sangeetha et al. Pan-cancer exploration of oncogenic and clinical impacts revealed that HOXA9 is a diagnostic indicator of tumorigenesis. (2024) CLINICAL AND EXPERIMENTAL MEDICINE 1591-8890 1591-9528 24 1
  50. Ma K et al. PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection. (2024) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1545-5963 1557-9964 21 3 480-491
  51. Shim Bosung et al. RiboTag RNA Sequencing Identifies Local Translation of HSP70 In Astrocyte Endfeet After Cerebral Ischemia. (2024)
  52. Vo D.H.T. et al. Shrinkage estimation of gene interaction networks in single-cell RNA sequencing data. (2024) BMC BIOINFORMATICS 1471-2105 1471-2105 25 1
  53. Kumar Kamendra et al. Simulated Galactic Cosmic Radiation Exposure-Induced Mammary Tumorigenesis in ApcMin/+ Mice Coincides with Activation of ERα-ERRα-SPP1 Signaling Axis. (2024) CANCERS 2072-6694 16 23 p. 3954
  54. Barvaux Sybille et al. SinCMat: A single-cell-based method for predicting functional maturation transcription factors. (2024) STEM CELL REPORTS 2213-6711 2213-6711 19 2 270-284
  55. Perevalova Alina M. et al. Smoking-Mediated miR-301a/IRF1 Axis Controlling Immunotherapy Response in Lung Squamous Cell Carcinoma Revealed by Bioinformatic Analysis. (2024) CANCERS 2072-6694 16 12
  56. Hu Xiaoxuan et al. Systematic discovery of DNA-binding tandem repeat proteins. (2024) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 52 17 10464-10489
  57. Chakraborty Sohini et al. Systems Approaches in Identifying Disease-Related Genes and Drug Targets. (2024) Megjelent: Systems Biology Approaches: Prevention, Diagnosis, and Understanding Mechanisms of Complex Diseases pp. 195-255
  58. Balaji Sathyanarayan et al. Targeting IKZF1 via HDAC1: Combating Acute Myeloid Leukemia. (2024) INTEGRATIVE BIOLOGY 1757-9694 1757-9708 16 p. zyae022
  59. Garge Riddhiman K. et al. The proteomic landscape and temporal dynamics of mammalian gastruloid development. (2024) bioRxiv 2692-8205
  60. Gasperoni Jemma G. et al. The Role of PLAG1 in Mouse Brain Development and Neurogenesis. (2024) MOLECULAR NEUROBIOLOGY 0893-7648 1559-1182 61 8 5851-5867
  61. Korthagen N.M. et al. Thyroid hormone induces ossification and terminal maturation in a preserved OA cartilage biomimetic model. (2024) ARTHRITIS RESEARCH & THERAPY 1478-6354 1478-6362 26 1
  62. Kiontke Karin C. et al. Tissue-specific RNA-seq defines genes governing male tail tip morphogenesis in C. elegans. (2024) DEVELOPMENT 0950-1991 1477-9129 151 18
  63. Afonso J. et al. Transcription factors and miRNA act as contrary regulators of gene expression in the testis and epididymis of Bos indicus animals. (2024) GENE 0378-1119 1879-0038 899
  64. Loaiza-Moss Jocshan et al. Transcriptome Profiling of Mouse Embryonic Fibroblast Spontaneous Immortalization: A Comparative Analysis. (2024) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 25 15 p. 8116
  65. Azuma Shota et al. TRBP regulates poly(I:C)-mediated apoptotic pathway by modulating miRNA biogenesis. (2024) bioRxiv 2692-8205
  66. Tooley Kyla B.. Unraveling the Role of DNA Modifications in Cell Type-Specific Genome Regulation During Aging - ProQuest. (2024)
  67. Liu Jiahui et al. WDR23 mediates NRF2 proteostasis and cytoprotective capacity in the hippocampus. (2024) MECHANISMS OF AGEING AND DEVELOPMENT 0047-6374 1872-6216 218
  68. Holguin-Cruz Jorge A. et al. Widespread alteration of protein autoinhibition in human cancers. (2024) CELL SYSTEMS 2405-4712 2405-4720 15 3 246-263.e7
  69. Šimon Martin et al. A bioinformatics toolbox to prioritize causal genetic variants in candidate regions. (2025) TRENDS IN GENETICS 0168-9525 1362-4555 41 1 33-46
  70. Shao Xin et al. Advancing network pharmacology with artificial intelligence: the next paradigm in traditional Chinese medicine. (2025) CHINESE JOURNAL OF NATURAL MEDICINES 2095-6975 1875-5364 23 11 1358-1376
  71. Ravichandran Prashanthi et al. Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks. (2025) GENOME RESEARCH 1088-9051 1549-5469 35
  72. Cheng Sze et al. Alternatively-Spliced CAMKK2 isoforms drive differential metabolic stress response and the regulation of ferroptosis. (2025)
  73. Karaoglu Begum et al. A Regulatory Circuits Analysis Tool, "miRCuit," Helps Reveal Breast Cancer Pathways: Toward Systems Medicine in Oncology. (2025) OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 1536-2310 1557-8100 29 2 49-59
  74. Singh Simran et al. A Temporal Single-Cell Multi-Omics Atlas of Murine Pancreatic Islet Remodeling During Hyperglycaemia Progression. (2025) bioRxiv 2692-8205
  75. Noel Lake et al. Benchmarking large language models for identifying transcription factor regulatory interactions. (2025) BIOINFORMATICS 1367-4803 1367-4811 42
  76. Kvamme Jarred et al. Causal network inference of cis- and trans-gene regulation of expression quantitative trait loci across human tissues. (2025) GENETICS 0016-6731 1943-2631 229
  77. Cheng Pan et al. C/EBPβ-mediated PARP1 Suppression Drives Tumor Progression of Aneuploid Cells. (2025) bioRxiv 2692-8205
  78. Waild Nicole et al. Cellular antibody affinity-based CRISPR Screening identifies JUNB as a broadly acting anti-viral factor. (2025) bioRxiv 2692-8205
  79. Wang Panwen et al. ceQTL: A co-expression QTL model to detect a variant that affects transcription factor binding and its target regulation. (2025) bioRxiv 2692-8205
  80. Visentin Andrea et al. Clinical and transcriptomic characterization of patients with chronic lymphocytic leukemia harboring t(14;19): an ERIC study. (2025) LEUKEMIA 0887-6924 1476-5551 39
  81. Franklin Ellis et al. Cluefish: mining the dark matter of transcriptional data series with over-representation analysis enhanced by aggregated biological prior knowledge. (2025) NAR GENOMICS AND BIOINFORMATICS 2631-9268 7 3
  82. Gupta Shreyan et al. Constructing Gene Regulatory Network using Chatterjee's Rank Correlation with Single-cell Transcriptomic Data. (2025) bioRxiv 2692-8205
  83. Wang Hongge et al. CRESTA: a comprehensive transcriptome atlas for cellular response to external stressors. (2025) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 53
  84. Cattaneo Olivia et al. CtBP1 coordinates synaptic, metabolic and contractile changes induced by denervation in skeletal muscle. (2025) bioRxiv 2692-8205
  85. Shah Hetvi et al. Deciphering protein–DNA interactions of KISS1 with transcription factors through molecular docking, molecular dynamics simulations, and gene expression analysis. (2025) JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 0739-1102 1538-0254 43 1-17
  86. Escrivà-Font Joan et al. Decoding sex differences in human immunity through systems immunology. (2025) OXFORD OPEN IMMUNOLOGY 2633-6960 6 1
  87. Javed Awais et al. Developmental gene expression patterns driving species-specific cortical features. (2025)
  88. Clouser Patrick R. et al. Diapause and Anoxia-Induced Quiescence Are Unique States in Embryos of the Annual Killifish, Austrofundulus limnaeus. (2025) BIOMOLECULES 2218-273X 2218-273X 15 4 p. 515
  89. Wang Xinru et al. Dissecting cross‐lineage tumourigenesis under p53 inactivation through single‐cell multi‐omics and spatial transcriptomics. (2025) CLINICAL AND TRANSLATIONAL MEDICINE 2001-1326 2001-1326 15 9
  90. Li Mengyu et al. Double optimal transport for differential gene regulatory network inference with unpaired samples. (2025) BIOINFORMATICS 1367-4803 1367-4811 41 8
  91. Zhou Jiafeng et al. Dual lineage origins contribute to neocortical astrocyte diversity. (2025) NATURE COMMUNICATIONS 2041-1723 16 1
  92. Hamrick Mark W. et al. Effects of two longevity interventions, calorie restriction and rapamycin treatment, on the kynurenine-aryl hydrocarbon receptor pathway in aging skeletal muscle. (2025) BIOCHIMIE 0300-9084 1638-6183 239
  93. Chang Chia-Wei et al. EGR3 Promotes Glioblastoma Cell Growth with Upregulation of MYC and CDK1. (2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 26 13 p. 5931
  94. Goovaerts Seppe et al. Enhanced insights into the genetic architecture of 3D cranial vault shape using pleiotropy-informed GWAS. (2025) COMMUNICATIONS BIOLOGY 2399-3642 8 1
  95. Zhang Dezhong et al. Exploring genetic mapping and co-expression patterns to illuminate significance of Tbx20 in cardiac biology. (2025) TRANSGENIC RESEARCH 0962-8819 1573-9368 34 1
  96. Cho Hayoung et al. Glucocorticoid-induced proteome and phosphoproteome changes in breast cancer cell lines. (2025) bioRxiv 2692-8205
  97. Zhou Yusen et al. GlycoEnzDB: A database of enzymes involved in human glycosylation. (2025) bioRxiv 2692-8205
  98. Graf Lisa-Marie et al. Il33 expressing cDC2s promote expansion of ILC2s and eosinophilia in fungal airway inflammation in male mice. (2025) bioRxiv 2692-8205
  99. Panni Simona et al. Integrated Analysis of microRNA Targets Reveals New Insights into Transcriptional–Post-Transcriptional Regulatory Cross-Talk. (2025) BIOLOGY-BASEL 2079-7737 14 1 p. 43
  100. Rehawi Ghalia et al. Integrative Gene and Isoform Co-expression Networks Reveal Regulatory Rewiring in Stress-related Psychiatric Disorders. (2025)
  101. Consens Micaela E. et al. Interpreting Attention Mechanisms in Genomic Transformer Models: A Framework for Biological Insights. (2025) bioRxiv 2692-8205
  102. Kim Kwansoo et al. InTiCAR: Network-based identification of significant inter-tissue communicators for autoimmune diseases. (2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 2001-0370 2001-0370 27 333-345
  103. Kołat Damian et al. Intratumoral Microbiota Correlates with AP-2 Expression: A Pan-Cancer Map with Cohort-Specific Prognostic and Molecular Footprints. (2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 26 23 p. 11587
  104. Sarkar Chinmoy et al. Lysosomal multi-omics reveals altered sphingolipid catabolism as driver of lysosomal dysfunction in the aging brain. (2025) bioRxiv 2692-8205
  105. Wang Han et al. MAAT: a new nonparametric Bayesian framework for incorporating multiple functional annotations in transcriptome-wide association studies. (2025) GENOME BIOLOGY 1474-7596 1474-760X 1465-6906 26 1
  106. Feng Minghao et al. MED12-STAT1-TAP2 axis regulates CD8 + T cell cytotoxicity and mediates immunotherapy outcome in non-small cell lung cancer. (2025) FUNCTIONAL & INTEGRATIVE GENOMICS 1438-793X 1438-7948 25 1
  107. Muncie-Vasic Jonathon M. et al. MEF2C controls segment-specific gene regulatory networks that direct heart tube morphogenesis. (2025) GENES & DEVELOPMENT 0890-9369 1549-5477 39
  108. Zalewski Daniel et al. Molecular Signatures Related to Inflammation and Angiogenesis in Patients with Lower Extremity Artery Disease, Abdominal Aortic Aneurysm, and Varicose Veins: Shared and Distinct Pathways. (2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 26 18 p. 8786
  109. Aguerralde-Martin Maider et al. MORE interpretable multi-omic regulatory networks to characterise phenotypes. (2025) BRIEFINGS IN BIOINFORMATICS 1467-5463 1477-4054 26 3
  110. Segura-Ortiz Adrián et al. Multifaceted evolution focused on maximal exploitation of domain knowledge for the consensus inference of Gene Regulatory Networks. (2025) COMPUTERS IN BIOLOGY AND MEDICINE 0010-4825 1879-0534 196 p. 110632
  111. Toumpe Ilias et al. Multi-omics-driven kinetic modeling reveals metabolic vulnerabilities and differential drug-response dynamics in ovarian cancer. (2025) bioRxiv 2692-8205
  112. Cappadona Claudio et al. Multi-Omics Identifies Oxidative Stress, Prothrombotic Pathways, and Lactoperoxidase Variants as Key Factors in COVID-19 Severity. (2025) SOCIAL SCIENCE RESEARCH NETWORK: SSRN 1556-5068
  113. Čater Maša et al. PLA2G4E in health and disease: Insights from omics and functional analyses. (2025) PROGRESS IN LIPID RESEARCH 0163-7827 1873-2194 100 p. 101359
  114. Munnik Floor et al. Prognostic Differences of Adjuvant Radiotherapy in Breast Cancer Cohorts Based on PRLR Genotypes, Expression, and Transcriptional Network Regulation. (2025) CANCERS 2072-6694 17 14 p. 2378
  115. Gjerga Enio et al. Reading papers: Extraction of molecular interaction networks with large language models. (2025) bioRxiv 2692-8205
  116. Bielas Stephanie et al. RNF2 Missense Variants Disrupt Polycomb Repression and Enable Ectopic Mesenchymal Lineage Conversion During Human Neural Differentiation. (2025) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  117. Ouyang Juan et al. Shared molecular consequences of epigenetic machinery disruption in neuronal progenitors. (2025) bioRxiv 2692-8205
  118. Wright Sarah N et al. State of the interactomes: an evaluation of molecular networks for generating biological insights. (2025) MOLECULAR SYSTEMS BIOLOGY 1744-4292 1744-4292 21 1 1-29
  119. Stacy Carson L. et al. Surprising regulatory plasticity for the conserved HOG pathway in diverse Saccharomyces cerevisiae strains. (2025) bioRxiv 2692-8205
  120. Gasperoni Jemma. The Role of PLAG1 in Brain Development. (2025)
  121. Julianna Novák et al. The sweet and the bitter sides of galectin-1 in immunity: its role in immune cell functions, apoptosis, and immunotherapies for cancer with a focus on T cells. (2025) SEMINARS IN IMMUNOPATHOLOGY 1863-2297 1863-2300 47 1
  122. Schindler Joseph C. et al. Transcriptional responses to nitric oxide are widescale and source-dependent. (2025) JOURNAL OF BIOLOGICAL CHEMISTRY 0021-9258 1083-351X 301 p. 110476
  123. Kwon Min-Kyeong et al. Transcription factors overcome the repressive impact of Polycomb-associated methylation in tumors. (2025)
  124. Loaiza-Moss Jocshan et al. Transcriptome Analysis Suggests PKD3 Regulates Proliferative Glucose Metabolism, Calcium Homeostasis and Microtubule Dynamics After MEF Spontaneous Immortalization. (2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 26 2 p. 596
  125. Nabariya Deepti Kailash et al. Transcriptomic analysis of intracellular RNA granules and small extracellular vesicles: Unmasking their overlap in a cell model of Huntington's disease. (2025) MOLECULAR AND CELLULAR PROBES 0890-8508 1096-1194 81
  126. Bairy Medha et al. Understanding the Role of Pyruvate Dehydrogenase Kinase 3 in Gynecological Cancers. (2025) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  127. Roy Ankan et al. A Comprehensive Gene Expression Analysis of Extensive Cohorts From Colon Adenocarcinoma Uncovered a Set of Genes Regulated by DNA Hypomethylation and Predominantly Influenced by Lipid Raft‐Mediated EGFR‐RAS‐MAPK Signaling. (2026) MOLECULAR CARCINOGENESIS 0899-1987 1098-2744 65
  128. Ng Mei Ying et al. A druggable redox switch on SHP1 controls macrophage inflammation. (2026) bioRxiv 2692-8205
  129. Ding Wubin et al. A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia. (2026) bioRxiv 2692-8205
  130. Sangree Annabel K. et al. A novel iPSC model of Bryant-Li-Bhoj neurodevelopmental/neurodegenerative syndrome demonstrates the role of histone H3.3 in chromatin dynamics, neuronal differentiation, and maturation. (2026) JOURNAL OF TRANSLATIONAL MEDICINE 1479-5876 1479-5876 24 1
  131. Wright Sarah N et al. Common and rare genetic variants show network convergence for a majority of human traits. (2026) EMBO REPORTS 1469-221X 1469-3178 27
  132. Xia Yan et al. Controlling gene expression using AI designed Cis-regulatory elements. (2026) BIOTECHNOLOGY ADVANCES 0734-9750 1873-1899 87 p. 108802
  133. Cattaneo Olivia et al. CtBP1 sustains activity-dependent muscle properties and dampens synaptic, contractile and metabolic changes triggered by denervation. (2026) SKELETAL MUSCLE 2044-5040 2044-5040 16
  134. Saleki Kiarash et al. Disruption of NANOG-driven epithelial-mesenchymal transition (EMT) and self-renewal restores drug sensitivity in colorectal cancer. (2026) DRUG RESISTANCE UPDATES 1368-7646 1532-2084 84 p. 101321
  135. Cakir Merve et al. Genetic survey of biomarkers across pregnancy identifies pregnancy-specialized immune regulation. (2026) MEDRXIV 3067-2007
  136. Zhang Celia et al. Hormonal regulation of cochlear gene expression: effects of the estrous cycle, ovariectomy, and estradiol treatment. (2026) BIOLOGY OF SEX DIFFERENCES 2042-6410
  137. Rousseau Marine et al. Insights into the regulation and signaling landscape of cardiotrophin-like cytokine factor 1 (CLCF1). (2026) BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 0167-4889 1879-2596 1873 3 p. 120123
  138. Segura-Ortiz Adrián et al. Multi-objective consensus optimization for gene regulatory networks inference: A preference-based approach. (2026) COMPUTATIONAL BIOLOGY AND CHEMISTRY 1476-9271 1476-928X 121 p. 108827
  139. Ma Qi et al. NOTCH3 attenuates cytotoxicity via RBPJ-dependent PVR upregulation to influence immunotherapy outcomes in colorectal cancer. (2026) FRONTIERS IN IMMUNOLOGY 1664-3224 1664-3224 17
  140. Gonçalves Paula P.. Putative role of TMEM165 in congenital cardiomyopathies. (2026) FRONTIERS IN MOLECULAR NEUROSCIENCE 1662-5099 1662-5099 18
  141. Gadiya Yojana et al. pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources. (2026) BIOINFORMATICS 1367-4803 1367-4811 42 3
  142. Belém-Souza Marcella Vitória et al. Regulon Reconstruction Uncovers Novel Deregulated Factors in Alzheimer’s Disease. (2026) MOLECULAR NEUROBIOLOGY 0893-7648 1559-1182 63 1
  143. Vicencio Emiliano et al. Transcription-based comparison of Aggregatibacter actinomycetemcomitans or Porphyromonas gingivalis -induced experimental periodontitis. (2026) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 15
  144. Bouska Mark et al. Transcriptome remodeling of mouse hearts during postnatal cardiac maturation and under proteotoxic stress. (2026) MOLECULAR BIOLOGY REPORTS 0301-4851 1573-4978 53 1
  145. Klinkhammer Barbara Mara et al. Tubular cell-specific platelet-derived growth factor-B drives formation of fibrogenic niches in kidney fibrosis. (2026) KIDNEY INTERNATIONAL 0085-2538 1523-1755 109
15.
Gerber, Dániel ; Ari, Eszter ; Szeifert, Bea ; Kiss, Viktória ; Fábián, Szilvia ; Kustár, Ágnes ; Köhler, Kitti ; Mende, Balázs Gusztáv ; Szécsényi-Nagy, Anna
Uncanny genetic proportions from Hungary suggest a long lasting Hunter-Gatherer ancestry in Central Europe at the Bronze Age
In: 9th International Symposium on Biomolecular Archaeology - ISBA9 : Abstract Book
(2021) 138 p. pp. 121-122. , 2 p.
Központi kezelésű Közlemény:32681011 Admin láttamozott Forrás Egyéb konferenciaközlemény (Absztrakt / Kivonat ) Tudományos
Absztrakt / Kivonat (Egyéb konferenciaközlemény) | Tudományos[32681011] [Admin láttamozott]
16.
Visnyovszki, Ádám ; Orosz, László ; Kintses, Bálint ; Stirling, Tamás ; Vásárhelyi, Bálint Márk ; Ari, Eszter ; Kiss, Enikő ; Papp, Balázs ; Apjok, Gábor ; Vidovics, Fanni et al.
A COVID-19 PANDÉMIÁHOZ TÁRSULÓAN ELŐFORDULT MULTIREZISZTENS ACINETOBACTER BAUMANNII TÖRZSEK MOLEKULÁRIS JELLEMZÉSE (2021)
Magyar Infektológiai és Klinikai Mikrobiológiai Társaság 48. Kongresszusa 2021-09-30 [Debrecen, Magyarország], (ELŐADÁS),
Közlemény:32476999 Nyilvános Forrás Egyéb (Nem besorolt ) Tudományos
Nem besorolt (Egyéb) | Tudományos[32476999] [Nyilvános]
17.
Bálint, Anita ; Farkas, Klaudia ; Méhi, Orsolya ; Kintses, Bálint ; Vásárhelyi, Bálint Márk ; Ari, Eszter ; Pál, Csaba ; Madácsy, Tamara ; Maléth, József ; Szántó, Kata Judit et al.
Functional Anatomical Changes in Ulcerative Colitis Patients Determine Their Gut Microbiota Composition and Consequently the Possible Treatment Outcome
PHARMACEUTICALS 13 : 11 Paper: 346 , 16 p. (2020)
DOI REAL WoS Scopus PubMed Egyéb URL SZTE Publicatio
Központi kezelésű Közlemény:31647953 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
Nyilvános idéző összesen: 28 | Független: 26 | Függő: 2 | Nem jelölt: 0 | WoS jelölt: 21 | Scopus jelölt: 21 | WoS/Scopus jelölt: 22 | DOI jelölt: 27
Szakcikk (Folyóiratcikk) | Tudományos[31647953] [Egyeztetett]
Nyilvános idéző összesen: 28, Független: 26, Függő: 2, Nem jelölt: 0
  1. Cojkic A. et al. Identification of bull semen microbiome by 16s sequencing and possible relationships with fertility. (2021) MICROORGANISMS 2076-2607 9 12
  2. Cai B. et al. Oyster polysaccharides ameliorate intestinal mucositis and improve metabolism in 5-fluorouracil-treated S180 tumour-bearing mice. (2021) CARBOHYDRATE POLYMERS 0144-8617 1879-1344 256
  3. Sheng K. et al. Probiotic Bacillus cereus Alleviates Dextran Sulfate Sodium-Induced Colitis in Mice through Improvement of the Intestinal Barrier Function, Anti-Inflammation, and Gut Microbiota Modulation. (2021) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 0021-8561 1520-5118 69 49 14810-14823
  4. Akiyama S. et al. Diagnostic and Management Considerations for the IPAA With Crohn's Disease-Like Features. (2022) DISEASES OF THE COLON & RECTUM 0012-3706 1530-0358 65 Suppl. 1 S77-S84
  5. Zhang Qing et al. Kappaphycus Alvarezii Compound Powder Prevents Chemotherapy-Induced Intestinal Mucositis in BALB/c Mice. (2022) NUTRITION AND CANCER : AN INTERNATIONAL JOURNAL 0163-5581 1532-7914 74 10 3735-3746
  6. Molina-Vega M. et al. Metformin action over gut microbiota is related to weight and glycemic control in gestational diabetes mellitus: A randomized trial. (2022) BIOMEDICINE & PHARMACOTHERAPY 0753-3322 1950-6007 145
  7. Le-Trilling V.T.K. et al. Acute cytomegalovirus infection modulates the intestinal microbiota and targets intestinal epithelial cells. (2023) EUROPEAN JOURNAL OF IMMUNOLOGY 0014-2980 1521-4141 53 2
  8. Flores Erika. A larval zebrafish (Danio rerio) model of adherent-invasive Escherichia coli infections. (2023)
  9. Yang Jhih-Yi et al. Ameliorative effect of buckwheat polysaccharides on colitis via regulation of the gut microbiota.. (2023) INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 0141-8130 1879-0003 227 872-883
  10. Yin H. et al. Differences in Gut Microbiota between Healthy Individuals and Patients with Perianal Abscess before and after Surgery. (2023) MEDIATORS OF INFLAMMATION 0962-9351 1466-1861 2023
  11. * Péter Bacsur et al. Effects of bowel cleansing on the composition of the gut microbiota in inflammatory bowel disease patients and healthy controls. (2023) THERAPEUTIC ADVANCES IN GASTROENTEROLOGY 1756-283X 1756-2848 16
  12. Kousgaard Sabrina Just. Faecal Microbiota Transplantation for Treatment of Chronic Pouchitis: Role of Gut Microbiota in Disease Mechanism and Treatment of Pouchitis. (2023)
  13. Filidou Eirini et al. Special Issue “Gut Microbiota, Inflammatory Bowel Diseases, and Therapeutic Targets”. (2023) PHARMACEUTICALS 1424-8247 16 5
  14. Toto Francesca et al. A Novel Microbial Dysbiosis Index and Intestinal Microbiota-Associated Markers as Tools of Precision Medicine in Inflammatory Bowel Disease Paediatric Patients. (2024) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 25 17 p. 9618
  15. Dahl Sham Al-Mashadi et al. Diverticular disease and risk of dementia: a Danish population-based cohort study. (2024) JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY 0815-9319 1440-1746 39 4 685-693
  16. Li X. et al. Mechanism of Phyllanthus emblica polyphenols in alleviating DSS-induced ulcerative colitis: Insights from transcriptomics and microbiome analysis. (2024) FOOD BIOSCIENCE 2212-4292 2212-4306 61
  17. Erganis Sidre et al. Pathogen prevalence in IBD and non-IBD patients using multiplex PCR stool test. (2024) ANNALS OF CLINICAL AND ANALYTICAL MEDICINE 2667-663X 15 1 66-70
  18. * Bacsur Péter et al. Shotgun Analysis of Gut Microbiota with Body Composition and Lipid Characteristics in Crohn’s Disease. (2024) BIOMEDICINES 2227-9059 12 9
  19. Hezhai Y. I. et al. 肛周脓肿患者手术前后与健康人肠道菌群的差异性分析 [Analysis of the difference of intestinal flora between patients with perianal abscess before and after surgery and healthy people]. (2024) CHINESE JOURNAL OF GENERAL PRACTICE 1674-4152 22 1 59-63
  20. Tang Xingyi et al. Cecal microbiota transplantation enhances calcium retention through modulation of gut microbiota and intestinal calcium transporter gene expression in chicks. (2025) POULTRY SCIENCE 0032-5791 1525-3171 104 9
  21. Wang Yunpeng et al. Dietary Inulin Improves Pork Quality and Systemic Health Via Gut Microbiome and Metabolome Modulation in Finishing Pigs. (2025)
  22. Nesi Natalia Biezus et al. Doença de Crohn e colite ulcerativa no Brasil (2013-2023): análise epidemiológica das internações pelo SUS com discussão das possíveis alterações anatômicas associadas [Crohn’s disease and ulcerative colitis in Brazil (2013-2023): Epidemiological analysis of hospitalizations through SUS with discussion of possible associated anatomical changes]. (2025) REVISTA CPAQV–CENTRO DE PESQUISAS AVANÇADAS EM QUALIDADE DE VIDA 2178-7514 17 1
  23. Chen Jian et al. Effects of cecropin antimicrobial peptides on growth and intestinal health in growing male minks. (2025) FRONTIERS IN VETERINARY SCIENCE 2297-1769 12
  24. Cao TingTing et al. Leonurine Alleviates DSS-Induced Colitis in Mice by Regulating Pancreatic Secretion Pathway and Gut Microbiota. (2025) JOURNAL OF IMMUNOLOGY RESEARCH 2314-8861 2314-7156 2025
  25. Lan Y. et al. Quinoa Ethanol Extract Ameliorates Cognitive Impairments Induced by Hypoxia in Mice: Insights into Antioxidant Defense and Gut Microbiome Modulation. (2025) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 0021-8561 1520-5118 73 6 3427-3443
  26. Li Chonglei et al. Steam explosion enhancing Bacillus subtilis fermentation on lignocellulosic biomass to prepare high-titer microecological agents. (2025) INDUSTRIAL CROPS AND PRODUCTS 0926-6690 1872-633X 226 p. 120707
  27. Niu Chao et al. Probiotics for ulcerative colitis: mechanisms, therapeutic advances, and emerging strategies. (2026) FRONTIERS IN MICROBIOLOGY 1664-302X 17
  28. Kelley Colleen F.. Unraveling the Rectal Virome: Microbial Crosstalk, Immune Modulation, and Clinical Outcomes in People with and Vulnerable to HIV. (2026) PREPRINTS 2310-287X
18.
Kintses, B. ✉ ; Jangir, P.K.* ; Fekete, G.* ; Számel, M. ; Méhi, O. ; Spohn, R. ; Daruka, L. ; Martins, A. ; Hosseinnia, A. ; Gagarinova, A. et al.
Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action
NATURE COMMUNICATIONS 10 : 1 Paper: 5731 , 13 p. (2019)
DOI WoS EDIT REAL Scopus PubMed Egyéb URL SZTE Publicatio
Központi kezelésű Közlemény:31038930 Nyilvános Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
Nyilvános idéző összesen: 52 | Független: 44 | Függő: 8 | Nem jelölt: 0 | WoS jelölt: 41 | Scopus jelölt: 35 | WoS/Scopus jelölt: 43 | DOI jelölt: 44
Szakcikk (Folyóiratcikk) | Tudományos[31038930] [Nyilvános]
Nyilvános idéző összesen: 52, Független: 44, Függő: 8, Nem jelölt: 0
  1. * Spohn Reka et al. Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance. (2019) NATURE COMMUNICATIONS 2041-1723 10
  2. * Csoergo Balint et al. A compact Cascade-Cas3 system for targeted genome engineering. (2020) NATURE METHODS 1548-7091 1548-7105 17 12 p. 1183+
  3. Hernando-Amado S. et al. Antibiotic Resistance: Moving From Individual Health Norms to Social Norms in One Health and Global Health. (2020) FRONTIERS IN MICROBIOLOGY 1664-302X 11
  4. El-Shazely Baydaa Mohamed. Antimicrobial peptide resistance: infection dynamics, cross-sensitivity to insect immune effectors, and evolution of pharmacodynamics. (2020)
  5. Trivedi Vikas D. et al. Charged Gram-positive species sequester and decrease the potency of pediocin PA-1 in mixed microbial settings. (2020)
  6. Correia Annapaula et al. Protein antibiotics: mind your language. (2020) NATURE REVIEWS MICROBIOLOGY 1740-1526 1740-1534 19 1 p. 7
  7. Ting D.S.J. et al. Strategies in Translating the Therapeutic Potentials of Host Defense Peptides. (2020) FRONTIERS IN IMMUNOLOGY 1664-3224 1664-3224 11
  8. Dong M. et al. BING, a novel antimicrobial peptide isolated from Japanese medaka plasma, targets bacterial envelope stress response by suppressing cpxR expression. (2021) SCIENTIFIC REPORTS 2045-2322 11 1
  9. * Jangir Pramod K. et al. Evolutionary constraints on the acquisition of antimicrobial peptide resistance in bacterial pathogens. (2021) TRENDS IN MICROBIOLOGY 0966-842X 1878-4380 29 12 1058-1061
  10. Gagarinova A. et al. Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks. (2021) METHODS IN MOLECULAR BIOLOGY 1064-3745 1940-6029 2381 3-37
  11. Liu J. et al. Rational Design of Dipicolylamine-Containing Carbazole Amphiphiles Combined with Zn2+as Potent Broad-Spectrum Antibacterial Agents with a Membrane-Disruptive Mechanism. (2021) JOURNAL OF MEDICINAL CHEMISTRY 0022-2623 1520-4804 64 14 10429-10444
  12. Zimmermann M. et al. Towards a mechanistic understanding of reciprocal drug–microbiome interactions. (2021) MOLECULAR SYSTEMS BIOLOGY 1744-4292 1744-4292 17 3
  13. Heger Thomas. Viola odorata L.: Identification and Characterization of Na+,K+-ATPase Inhibiting Component. (2021)
  14. Rodríguez-Rojas A. et al. Antimicrobial peptides - Inspiration from nature. (2022) BIOSPEKTRUM 0947-0867 1868-6249 28 2 135-137
  15. Ting Darren Shu. Current and Emerging Therapies for Corneal Infection: A Clinical and Laboratory Study. (2022)
  16. Shi G. et al. DRAMP 3.0: An enhanced comprehensive data repository of antimicrobial peptides. (2022) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 50 D1 D488-D496
  17. Wang Xueying et al. Effect of Microencapsulation Techniques on the Stress Resistance and Biological Activity of Bovine Lactoferricin-Lactoferrampin-Encoding Lactobacillus reuteri. (2022) FOODS 2304-8158 11 20
  18. * Jangir Pramod K et al. Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of resistance to a last-resort antibiotic. (2022) ELIFE 2050-084X 11
  19. Ferguson P.M. et al. Temporin B Forms Hetero-Oligomers with Temporin L, Modifies Its Membrane Activity, and Increases the Cooperativity of Its Antibacterial Pharmacodynamic Profile. (2022) BIOCHEMISTRY 0006-2960 1520-4995 61 11 1029-1040
  20. Georgieva Maria et al. The EnvZ/OmpR Two-Component System Regulates the Antimicrobial Activity of TAT-RasGAP(317-326) and the Collateral Sensitivity to Other Antibacterial Agents. (2022) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 10 3
  21. Boltsis Ilias et al. The genomic dimension in biodefense: Decontamination. (2022) Megjelent: Genomics in Biosecurity pp. 197-218
  22. Fodor András et al. Type Strains of Entomopathogenic Nematode-Symbiotic Bacterium Species, Xenorhabdus szentirmaii (EMC) and X. budapestensis (EMA), Are Exceptional Sources of Non-Ribosomal Templated, Large-Target-Spectral, Thermotolerant-Antimicrobial Peptides (by Both), and Iodinin (by EMC). (2022) PATHOGENS 2076-0817 11 3
  23. Fodor András et al. Antimicrobial Peptides (AMP) in the Cell-Free Culture Media of Xenorhabdus budapestensis and X. szentirmaii Exert Anti-Protist Activity against Eukaryotic Vertebrate Pathogens including Histomonas meleagridis and Leishmania donovani Species. (2023) ANTIBIOTICS 2079-6382 2079-6382 12 9
  24. Li Ting et al. Bacterial resistance to antibacterial agents: Mechanisms, control strategies, and implications for global health. (2023) SCIENCE OF THE TOTAL ENVIRONMENT 0048-9697 1879-1026 860
  25. Javed Ali et al. Effects of Escherichia coli LPS Structure on Antibacterial and Anti-Endotoxin Activities of Host Defense Peptides. (2023) PHARMACEUTICALS 1424-8247 16 10 p. 1485
  26. Liu Yiping et al. Evolutionary Multi-Objective Optimization in Searching for Various Antimicrobial Peptides [Feature]. (2023) IEEE COMPUTATIONAL INTELLIGENCE MAGAZINE 1556-603X 1556-6048 18 2 31-45
  27. Phuong Hai Bui et al. Impact of chemical modifications on the antimicrobial and hemolytic activity of helical amphipathic peptide Lasioglossin LL-III. (2023) AMINO ACIDS 0939-4451 1438-2199 55 1531-1544
  28. Ricaurte Deirdre. Mapping Drug-Microbe Interactions and Evolution in the Human Gut Microbiome. (2023)
  29. * Jangir Pramod K et al. The evolution of colistin resistance increases bacterial resistance to host antimicrobial peptides and virulence. (2023) ELIFE 2050-084X 12
  30. Fodor András et al. XENOFOOD—An Autoclaved Feed Supplement Containing Autoclavable Antimicrobial Peptides—Exerts Anticoccidial GI Activity, and Causes Bursa Enlargement, but Has No Detectable Harmful Effects in Broiler Cockerels despite In Vitro Detectable Cytotoxicity on LHM Cells. (2023) PATHOGENS 2076-0817 12 3
  31. Anurag Anand A. et al. A comprehensive guide on screening and selection of a suitable AMP against biofilm-forming bacteria. (2024) CRITICAL REVIEWS IN MICROBIOLOGY 1040-841X 1549-7828 50 5 859-878
  32. Dwivedi Manish et al. Biochemistry, Mechanistic Intricacies, and Therapeutic Potential of Antimicrobial Peptides: An Alternative to Traditional Antibiotics. (2024) CURRENT MEDICINAL CHEMISTRY 0929-8673 1875-533X 31 37 6110-6139
  33. Wei Ying et al. Injectable hydrogels doped with PDA nanoparticles for photothermal bacterial inhibition and rapid wound healing in vitro. (2024) RSC ADVANCES 2046-2069 2046-2069 14 4 2778-2791
  34. Li Chenkai. Machine learning for antimicrobial peptide discovery and design. (2024)
  35. Walker Allison S. et al. Primed for Discovery. (2024) BIOCHEMISTRY 0006-2960 1520-4995 63 21 2705-2713
  36. Salinas-Restrepo Cristian et al. Short Antimicrobial Peptide Derived from the Venom Gland Transcriptome of Pamphobeteus verdolaga Increases Gentamicin Susceptibility of Multidrug-Resistant Klebsiella pneumoniae. (2024) ANTIBIOTICS 2079-6382 2079-6382 13 1
  37. Cárdenas Constanza et al. Synthetic peptides as valuable and versatile tools for research: our 20 year journey in Chile. (2024) EXPLORATION OF DRUG SCIENCE 2836-7677 2 6 701-718
  38. Sakenova Nazgul et al. Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics. (2024) NATURE MICROBIOLOGY 2058-5276 2058-5276
  39. Raza Muhammad Zain et al. The mechanisms and clinical potential of collateral sensitivity in Mycobacterium tuberculosis: A literature review. (2024) MICROBE 2950-1946 3
  40. Jiang Zhihui et al. AI-Guided Design of Antimicrobial Peptide Hydrogels for Precise Treatment of Drug-resistant Bacterial Infections. (2025) ADVANCED MATERIALS 0935-9648 1521-4095 37 20
  41. * Martins Ana et al. Antibiotic candidates for Gram-positive bacterial infections induce multidrug resistance. (2025) SCIENCE TRANSLATIONAL MEDICINE 1946-6234 1946-6242 17 780
  42. Xu Xiaoqin et al. Characterization of avian β-defensin genes in Galliformes reveals widespread evolutionary diversification and distinct evolutionary relationships with infection risk. (2025) BMC GENOMICS 1471-2164 1471-2164 26 1
  43. Ritz Emily et al. Cross resistance emergence to polymyxins in Acinetobacter baumannii exposed in vitro to an antimicrobial peptide. (2025) npj Antimicrobials and Resistance 2731-8745 3 1
  44. Lee K. K.. Dissecting the Mechanisms Underlying Heterogeneous Antimicrobial Accumulation in Isogenic Bacterial Populations. (2025)
  45. * Daruka Lejla et al. ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro. (2025) NATURE MICROBIOLOGY 2058-5276 2058-5276 10 2 313-331
  46. * Maharramov Elvin et al. Exploring the principles behind antibiotics with limited resistance. (2025) NATURE COMMUNICATIONS 2041-1723 16 1
  47. Lee Ka Kiu et al. Heterogeneous efflux pump expression underpins phenotypic resistance to antimicrobial peptides. (2025) ELIFE 2050-084X 13
  48. Peng Hui et al. Ligand interaction landscape of transcription factors and essential enzymes in E. coli. (2025) CELL 0092-8674 1097-4172 188 5 1441-1455
  49. Li Chenkai et al. Mining the UniProtKB /Swiss‐Prot database for antimicrobial peptides. (2025) PROTEIN SCIENCE 0961-8368 1469-896X 34 4
  50. Xie Mei-Qiong et al. Regulatory networks of mRNAs and miRNAs involved in the immune response of diamondback moth, Plutella xylostella to fungal infection. (2025) BMC GENOMICS 1471-2164 1471-2164 26 1
  51. Al Bouni Mohamad Anas et al. A plant-derived antimicrobial peptide with multiple mechanisms of action exhibiting antibacterial and antibiofilm activities comparable to or superior to polymyxin B. (2026) Current Research in Microbial Sciences 2666-5174 2666-5174 10
  52. Al Bouni Mohamad. Diverse Roles of Nodule-Specific Proteins and Peptides in Medicago truncatula: From Symbiotic Function to Antimicrobial Activity. (2026)
19.
Kintses, Bálint ✉ ; Méhi, Orsolya* ; Ari, Eszter* ; Számel, Mónika ; Györkei, Ádám ; Jangir, Pramod K ; Nagy, István ; Pál, Ferenc ; Fekete, Gergely ; Tengölics, Roland et al.
Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota.
NATURE MICROBIOLOGY 4 : 3 pp. 447-458. , 12 p. (2019)
DOI WoS REAL Scopus PubMed SZTE Publicatio
Központi kezelésű Közlemény:30435652 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
Nyilvános idéző összesen: 110 | Független: 102 | Függő: 8 | Nem jelölt: 0 | WoS jelölt: 83 | Scopus jelölt: 78 | WoS/Scopus jelölt: 86 | DOI jelölt: 99
Szakcikk (Folyóiratcikk) | Tudományos[30435652] [Egyeztetett]
Nyilvános idéző összesen: 110, Független: 102, Függő: 8, Nem jelölt: 0
  1. Zhang Sheng et al. Facing a new challenge: the adverse effects of antibiotics on gut microbiota and host immunity. (2019) CHINESE MEDICAL JOURNAL 0366-6999 2542-5641 132 10 1135-1138
  2. * Spohn Reka et al. Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance. (2019) NATURE COMMUNICATIONS 2041-1723 10
  3. Boto Luis et al. Potential impacts of horizontal gene transfer on human health and physiology and how anthropogenic activity can affect it. (2019) FEBS JOURNAL 1742-464X 1742-4658 286 20 3959-3967
  4. Cyriaque Valentine et al. Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments. (2019) JOURNAL OF HAZARDOUS MATERIALS 0304-3894 1873-3336 382
  5. Socha Raymond D. et al. The Molecular Mechanisms Underlying Hidden Phenotypic Variation among Metallo-beta-Lactamases. (2019) JOURNAL OF MOLECULAR BIOLOGY 0022-2836 1089-8638 431 6 1172-1185
  6. Mookherjee Neeloffer et al. Antimicrobial host defence peptides: functions and clinical potential. (2020) NATURE REVIEWS DRUG DISCOVERY 1474-1776 1474-1784 19 5 311-332
  7. Lazzaro Brian P. et al. Antimicrobial peptides: Application informed by evolution. (2020) SCIENCE 0036-8075 1095-9203 368 6490
  8. Telhig S. et al. Bacteriocins to Thwart Bacterial Resistance in Gram Negative Bacteria. (2020) FRONTIERS IN MICROBIOLOGY 1664-302X 11
  9. Trivedi Vikas D. et al. Charged Gram-positive species sequester and decrease the potency of pediocin PA-1 in mixed microbial settings. (2020)
  10. Wu R. et al. Effect of Chondroitin Sulfate from Sturgeon on Intestinal Flora of Mice with Colorectal Cancer. (2020) SHIPIN KEXUE / FOOD SCIENCE 1002-6630 41 15 216-223
  11. * Bálint Anita et al. Functional Anatomical Changes in Ulcerative Colitis Patients Determine Their Gut Microbiota Composition and Consequently the Possible Treatment Outcome. (2020) PHARMACEUTICALS 1424-8247 13 11
  12. Lee Kihyun et al. Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. (2020) MICROBIOME 2049-2618 2049-2618 8 1
  13. Fodor András et al. Multidrug Resistance (MDR) and Collateral Sensitivity in Bacteria, with Special Attention to Genetic and Evolutionary Aspects and to the Perspectives of Antimicrobial Peptides—A Review. (2020) PATHOGENS 2076-0817 9 7
  14. Pietsch F. et al. Selection of resistance by antimicrobial coatings in the healthcare setting. (2020) JOURNAL OF HOSPITAL INFECTION 0195-6701 1532-2939 106 1 115-125
  15. Anthony Winston E et al. The Gut Microbiome as a Reservoir for Antimicrobial Resistance. (2020) JOURNAL OF INFECTIOUS DISEASES 0022-1899 1537-6613 223 SI 3 p. S209-S213
  16. Li Xing-Ping et al. Within-host heterogeneity and flexibility of mcr-1 transmission in chicken gut. (2020) INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS 0924-8579 1872-7913 55 1
  17. Lawrence Travis J. et al. amPEPpy 1.0: a portable and accurate antimicrobial peptide prediction tool. (2021) BIOINFORMATICS 1367-4803 1367-4811 37 14 2058-2060
  18. Ramos-Martín F. et al. Antimicrobial peptide k11 selectively recognizes bacterial biomimetic membranes and acts by twisting their bilayers. (2021) PHARMACEUTICALS 1424-8247 14 1
  19. de la Rosa et al. Antioxidant molecules as a source of mitigation of antibiotic resistance gene dissemination. (2021) ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 0066-4804 1098-6596 65 6
  20. Lin H. et al. Effect of composting on the conjugative transmission of sulfonamide resistance and sulfonamide-resistant bacterial population. (2021) JOURNAL OF CLEANER PRODUCTION 0959-6526 1879-1786 285
  21. * Jangir Pramod K. et al. Evolutionary constraints on the acquisition of antimicrobial peptide resistance in bacterial pathogens. (2021) TRENDS IN MICROBIOLOGY 0966-842X 1878-4380 29 12 1058-1061
  22. Brito Ilana Lauren. Examining horizontal gene transfer in microbial communities. (2021) NATURE REVIEWS MICROBIOLOGY 1740-1526 1740-1534 19 7 442-453
  23. Feng W. et al. Gut microbiota as a target to limit toxic effects of traditional Chinese medicine: Implications for therapy. (2021) BIOMEDICINE & PHARMACOTHERAPY 0753-3322 1950-6007 133
  24. Balhuizen Melanie D. Interplay between Outer Membrane Vesicles and Host Defense Peptides. (2021)
  25. Wu G. et al. Investigating the mechanism of action of aggregation-inducing antimicrobial Pept-ins. (2021) CELL CHEMICAL BIOLOGY 2451-9456 2451-9448 1074-5521 28 4 524-536
  26. Pastor Ibáñez Roque. La microbiota intestinal en individuos infectados por el virus de la inmunodeficiencia humana tipo-1. (2021)
  27. Roodgar M. et al. Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment. (2021) GENOME RESEARCH 1088-9051 1549-5469 31 8 1433-1446
  28. Gayathri K. Veena et al. Metabolic and molecular modelling of zebrafish gut biome to unravel antimicrobial peptides through metagenomics. (2021) MICROBIAL PATHOGENESIS 0882-4010 1096-1208 154
  29. Crofts Terence S. et al. Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries. (2021) MSYSTEMS 2379-5077 2379-5077 6 3 p. e00524-21
  30. Igler C. et al. Multi-step vs. single-step resistance evolution under different drugs, pharmacokinetics, and treatment regimens. (2021) ELIFE 2050-084X 10
  31. Anthony Eric Tobechukwu et al. Potentials of low-cost methods for the removal of antibiotic-resistant bacteria and their genes in low budget communities: A review. (2021) JOURNAL OF WATER PROCESS ENGINEERING 2214-7144 2214-7144 40
  32. Wang Anlu et al. [Research progress of bacterial flora microecology in the prevention and control of multidrug-resistant bacteria in ICU]. (2021) Chinese Journal of Critical Care Medicine(Electronic Edition) 1674-6880 14 4 323-326
  33. Fang Ding-li et al. [Research progress on the effect of antibiotics on intestinal colonization resistance]. (2021) CHINESE JOURNAL OF ANTIBIOTICS 1001-8689 46 2 113-120
  34. Dhariwal Achal et al. ResistoXplorer: a web-based tool for visual, statistical and exploratory data analysis of resistome data. (2021) NAR GENOMICS AND BIOINFORMATICS 2631-9268 3 1
  35. Serek P. et al. The effect of bacterial infections, probiotics and zonulin on intestinal barrier integrity. (2021) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 22 21
  36. He T. et al. The gut microbial diversity of colon cancer patients and the clinical significance. (2021) BIOENGINEERED 2165-5979 2165-5987 12 1 7046-7060
  37. Wang Shun. Biosafety assessment during anaerobic co-digestion of food waste and pig manure. (2022)
  38. Ramos-Martín F. et al. Bombyx mori Cecropin D could trigger cancer cell apoptosis by interacting with mitochondrial cardiolipin. (2022) BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 0005-2736 1879-2642 1864 10
  39. Maidment Toby. Characterisation of the pouch microbiome and association with reproductive outcomes in the koala (Phascolartos cinereus). (2022)
  40. Woo Connie W. et al. Commensal gut microbiota-based strategies for oral delivery of therapeutic proteins. (2022) TRENDS IN PHARMACOLOGICAL SCIENCES 0165-6147 1873-3735 43 12 1004-1013
  41. Pitchers Kieran. Dimerization as a strategy to engineer antimicrobial peptides for application against enteric bacterial pathogens of poultry. (2022)
  42. Yoshino N. et al. Dual Inhibitory Activity of Petroselinic Acid Enriched in Fennel Against Porphyromonas gingivalis. (2022) FRONTIERS IN MICROBIOLOGY 1664-302X 13
  43. Telhig Soufiane. Étude du potentiel des microcines comme alternative aux antibiotiques en santé animal : approche phénotypique, génomique et métabolomique. (2022)
  44. Ma Yue et al. Identification of antimicrobial peptides from the human gut microbiome using deep learning. (2022) NATURE BIOTECHNOLOGY 1087-0156 1546-1696 -
  45. Mehtani D. et al. Immunological paradox for maintaining normal flora: it is all by design, not by chance. (2022) Megjelent: Microbial Crosstalk with Immune System: New Insights in Therapeutics pp. 39-73
  46. Escobar-Salom M. et al. Mammals' humoral immune proteins and peptides targeting the bacterial envelope: from natural protection to therapeutic applications against multidrug-resistant Gram-negatives. (2022) BIOLOGICAL REVIEWS 1464-7931 1469-185X 97 3 1005-1037
  47. Ramos-Martín F. et al. Molecular basis of the anticancer, apoptotic and antibacterial activities of Bombyx mori Cecropin A. (2022) ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 0003-9861 1096-0384 715
  48. Zhao L. et al. Molecular dynamics simulations to study the role of biphenylalanine in promoting the antibacterial activity of ultrashort peptides. (2022) JOURNAL OF MOLECULAR GRAPHICS AND MODELLING 1093-3263 1873-4243 117
  49. Huy Xuan Luong et al. Multiple roles of ribosomal antimicrobial peptides in tackling global antimicrobial resistance. (2022) ROYAL SOCIETY OPEN SCIENCE 2054-5703 9 1
  50. Yu Zhigang et al. Non-caloric artificial sweeteners modulate conjugative transfer of multi-drug resistance plasmid in the gut microbiota. (2022) GUT MICROBES 1949-0976 1949-0984 15 1 p. 2157698
  51. * Jangir Pramod K et al. Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of resistance to a last-resort antibiotic. (2022) ELIFE 2050-084X 11
  52. Blair Jessica M et al. The role of bacterial transport systems in the removal of host antimicrobial peptides in Gram-negative bacteria. (2022) FEMS MICROBIOLOGY REVIEWS 0168-6445 1574-6976 June
  53. Fodor András et al. Type Strains of Entomopathogenic Nematode-Symbiotic Bacterium Species, Xenorhabdus szentirmaii (EMC) and X. budapestensis (EMA), Are Exceptional Sources of Non-Ribosomal Templated, Large-Target-Spectral, Thermotolerant-Antimicrobial Peptides (by Both), and Iodinin (by EMC). (2022) PATHOGENS 2076-0817 11 3
  54. Yu Zhigang. Uncovering roles of artificial sweeteners in the spread of antimicrobial resistance amongbacterial taxa. (2022)
  55. Rondinelli Mia Alessia. Variations in carbapenem resistance associated with the Verona integron-encoded metallo-beta-lactamase across the order Enterobacterales. (2022)
  56. * Daruka L et al. Antibiotics of the future are prone to resistance in Gram-negative pathogens. (2023)
  57. Chen Bingfeng et al. Antimicrobial Peptides in the Global Microbiome: Biosynthetic Genes and Resistance Determinants. (2023) ENVIRONMENTAL SCIENCE & TECHNOLOGY 0013-936X 1520-5851 57 20 7698-7708
  58. Li Ting et al. Bacterial resistance to antibacterial agents: Mechanisms, control strategies, and implications for global health. (2023) SCIENCE OF THE TOTAL ENVIRONMENT 0048-9697 1879-1026 860
  59. Zou S. et al. Characteristics of tetracycline antibiotic resistance genes in intestinal microorganisms and intestinal environment of Yunnan snub-nosed monkeys. (2023) SHOULEI XUEBAO / ACTA THERIOLOGICA SINICA 1000-1050 43 3 304-314
  60. Chaudhary S. et al. Efficient in planta production of amidated antimicrobial peptides that are active against drug-resistant ESKAPE pathogens. (2023) NATURE COMMUNICATIONS 2041-1723 2041-1723 14 1
  61. Martínez Osmel Fleitas. Elucidando a resposta de resistência de Klebsiella pneumoniae ao peptídeo antimicrobiano PaDBS1R1 desde uma perspectiva proteômica. (2023)
  62. Zhang Wentao et al. Fuse feeds as one: cross-modal framework for general identification of AMPs. (2023) BRIEFINGS IN BIOINFORMATICS 1467-5463 1477-4054 24 6
  63. Xu Bocheng et al. Gut-targeted nanoparticles deliver specifically targeted antimicrobial peptides against Clostridium perfringens infections. (2023) SCIENCE ADVANCES 2375-2548 2375-2548 9 39
  64. Moura de Sousa Jorge et al. Horizontal gene transfer among host-associated microbes. (2023) CELL HOST & MICROBE 1931-3128 1934-6069 31 4 513-527
  65. Liu Fei et al. Host Defense Peptide Piscidin and Yeast-Derived Glycolipid Exhibit Synergistic Antimicrobial Action through Concerted Interactions with Membranes. (2023) JACS AU 2691-3704 3 12 3345-3365
  66. Cometta Conde Silvia. Immobilization of antimicrobial agents via physical and chemical modifications on medical-grade polycaprolactone for the prevention of biomaterial-related infections. (2023)
  67. Dvoretckaia A. et al. Polymyxin B Conjugates with Bio-Inspired Synthetic Polymers of Different Nature. (2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 24 3
  68. Gschwind Rémi et al. ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics. (2023) NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962 51 W1 493-500
  69. Wang Binhao et al. Tackling Soil ARG-Carrying Pathogens with Global-Scale Metagenomics. (2023) ADVANCED SCIENCE 2198-3844 10 26
  70. Witzany Christopher et al. The pharmacokinetic–pharmacodynamic modelling framework as a tool to predict drug resistance evolution. (2023) MICROBIOLOGY-SGM 1350-0872 1465-2080 169 7
  71. Zhao Chongyi et al. Analyzing resistome in soil and Human gut: a study on the characterization and risk evaluation of antimicrobial peptide resistance. (2024) FRONTIERS IN MICROBIOLOGY 1664-302X 15
  72. Chen C. et al. Antimicrobial peptides as promising antibiotic adjuvants to combat drug-resistant pathogens. (2024) CRITICAL REVIEWS IN MICROBIOLOGY 1040-841X 1549-7828 50 3 267-284
  73. Bepler Tristan et al. Antiviral activity of the host defense peptide piscidin 1: investigating a membrane-mediated mode of action. (2024) FRONTIERS IN CHEMISTRY 2296-2646 2296-2646 12
  74. * Daruka Lejla. Az antimikrobiális peptidekkel szemben kialakuló rezisztencia rendszer szintű vizsgálata. (2024)
  75. Lobanov M. Y. et al. Comparison of deep learning models with simple method to assess the problem of antimicrobial peptides prediction. (2024) MOLECULAR INFORMATICS 1868-1743 1868-1751 43 5
  76. Wang Binhao et al. Global diversity, coexistence and consequences of resistome in inland waters. (2024) WATER RESEARCH 0043-1354 1879-2448 253
  77. Zhang Qi et al. Glyphosate Disorders Soil Enchytraeid Gut Microbiota and Increases Its Antibiotic Resistance Risk. (2024) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 0021-8561 1520-5118 72 4 2089-2099
  78. Zhang Lin et al. Impacts of COVID-19 pandemic on early life gut microbiome. (2024) GUT MICROBES 1949-0976 1949-0984 17 1
  79. el Battioui Kamal et al. In situ captured antibacterial action of membrane-incising peptide lamellae. (2024) NATURE COMMUNICATIONS 2041-1723 15 1
  80. Zhu S. et al. Investigation of the impact of widely used pesticides on conjugative transfer of multidrug resistance plasmids. (2024) JOURNAL OF HAZARDOUS MATERIALS 0304-3894 1873-3336 478
  81. Chai Jianmin et al. Metagenomics reveals the temporal dynamics of the rumen resistome and microbiome in goat kids. (2024) MICROBIOME 2049-2618 2049-2618 12 1
  82. Chaudhary Shahid et al. Molecular farming for sustainable production of clinical‐grade antimicrobial peptides. (2024) PLANT BIOTECHNOLOGY JOURNAL 1467-7644 1467-7652 22 8 2282-2300
  83. Tajer Layla et al. Molecular Mechanisms of Bacterial Resistance to Antimicrobial Peptides in the Modern Era: An Updated Review. (2024) MICROORGANISMS 2076-2607 12 7
  84. Chen Dongliang et al. Multi-DNA-Modified Double-Network Hydrogel with Customized Microstructure: A Novel System for Living Circulating Tumor Cells Capture and Real-Time Detection. (2024) ACS APPLIED MATERIALS & INTERFACES 1944-8244 1944-8252 16 7 8301-8309
  85. Chen Sizhe et al. Screening and identification of antimicrobial peptides from the gut microbiome of cockroach Blattella germanica. (2024) MICROBIOME 2049-2618 2049-2618 12 1
  86. Chen Sizhe et al. The discovery of antimicrobial peptides from the gut microbiome of cockroach Blattella germanica using deep learning pipeline. (2024) bioRxiv 2692-8205
  87. Jiang Qiuyun et al. A global deep-sea small protein atlas reveals a reservoir of noncanonical antimicrobial peptides. (2025) bioRxiv 2692-8205
  88. Li Xi et al. Antibiotic conjugates: Using molecular Trojan Horses to overcome drug resistance. (2025) BIOMEDICINE & PHARMACOTHERAPY 0753-3322 1950-6007 186 p. 118007
  89. Wijaya Andre Jatmiko et al. Current state and future prospects of Horizontal Gene Transfer detection. (2025) NAR GENOMICS AND BIOINFORMATICS 2631-9268 7 1
  90. Yang Chaofeng et al. Edible and Herbal Plants against Helicobacter pylori infection: from Epidemiological, Experimental studies to Clinical Perspectives. (2025) MICROBIAL PATHOGENESIS 0882-4010 1096-1208 201 p. 107386
  91. Xiao Lingyu et al. Emergence of Staphylococcus aureus Resistance to Antimicrobial Peptides Nisin, NZ2114 and Bacitracin Involves Multiple Phenotypic Changes. (2025) Animal Research and One Health 2835-5075 2835-5075 3 2
  92. * Daruka Lejla et al. ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro. (2025) NATURE MICROBIOLOGY 2058-5276 2058-5276 10 2 313-331
  93. * Maharramov Elvin et al. Exploring the principles behind antibiotics with limited resistance. (2025) NATURE COMMUNICATIONS 2041-1723 16 1
  94. Zhang Xiao-Xuan et al. Gut microbiota response to Enterocytozoon bieneusi infection: enhanced vitamin B and K 2 pathways. (2025) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  95. Lee Ka Kiu et al. Heterogeneous efflux pump expression underpins phenotypic resistance to antimicrobial peptides. (2025) ELIFE 2050-084X 13
  96. Peng Haoran et al. Longitudinal gut microbiota tracking reveals the dynamics of horizontal gene transfer. (2025) NATURE COMMUNICATIONS 2041-1723
  97. Fu Jingyuan et al. Longitudinal Gut Microbiota Tracking Reveals the Persistent Spread of Mobile Genes and HGT-Driven Community Stabilization. (2025) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015 0 p. rs.3.rs-6509357
  98. Zhao Y. et al. Metagenomic insights into the inhibitory effect of phytochemical supplementation on antibiotic resistance genes and virulence factors in the rumen of transition dairy cows. (2025) JOURNAL OF HAZARDOUS MATERIALS 0304-3894 1873-3336 490
  99. Shulenina Olga V. et al. New Aspects of Protein Biosynthesis Inhibition by Proline-Rich Antimicrobial Peptides. (2025) BIOCHEMISTRY-MOSCOW 0006-2979 1608-3040 90 11 1536-1552
  100. Kong Fanlin et al. Rumen microbiome associates with postpartum ketosis development in dairy cows: a prospective nested case–control study. (2025) MICROBIOME 2049-2618 2049-2618 13 1
  101. Lourenço Ana Laura et al. SET-M33 peptide as a selective in vitro antimicrobial agent against the porcine respiratory pathogen Glaesserella parasuis. (2025) bioRxiv 2692-8205
  102. Min Jihyeon et al. Sphingolipid-mediated vesiculation in multidrug-resistant Sphingobacterium detergens under polymyxin B stress. (2025) APPLIED AND ENVIRONMENTAL MICROBIOLOGY 0099-2240 1098-5336 92
  103. Chen Sizhe et al. Su2004: THE DISCOVERY OF MEDICALLY PROMISING ANTIMICROBIAL PEPTIDES FROM THE GUT MICROBIOME OF COCKROACH BLATTELA GERMANICA USING HIGH-THROUGHPUT DEEP LEARNING TOOL. (2025) GASTROENTEROLOGY 0016-5085 1528-0012 169 1 S-926-S-927
  104. Rondinelli Mia et al. Variations in carbapenem resistance associated with the VIM-1 metallo-β-lactamase across the Enterobacterales. (2025) bioRxiv 2692-8205
  105. Fan Qianjin et al. Whole-Genome Sequence Analysis, Probiotic Potential, and Safety Assessment of the Marine Bacterium Paraliobacillus zengyii CGMCC1.16464. (2025) MARINE DRUGS 1660-3397 1660-3397 23 5
  106. Cheng Yi et al. Bacteria-Induced Oligopeptide Assembly Enables Effective Bacterial Killing with Low Cytotoxicity and Hemolysis. (2026) BIOMACROMOLECULES 1525-7797 1526-4602 27
  107. Zhang Xiao-Xuan et al. Gut microbiota response to Enterocytozoon bieneusi infection in wild rodents: enhanced vitamin B and K2 biosynthesis pathways. (2026) BMC GENOMICS 1471-2164 1471-2164 27
  108. Pereira Lourenço Ana Laura et al. SET-M33 peptide as a selective in vitro antimicrobial agent against the porcine respiratory pathogen Glaesserella parasuis. (2026) MICROBIOLOGY SPECTRUM 2165-0497 2165-0497 14
  109. Ren Xing et al. Small open reading frame-encoded peptides (SEPs) as hidden treasures: a review. (2026) EXPERT OPINION ON DRUG DISCOVERY 1746-0441 1746-045X 21 1 73-100
  110. Yang Keming et al. Soil antibiotic resistome in farmland exhibits higher diversity and horizontal transfer potential than adjacent pastureland in agro-pastoral ecotone. (2026) ENVIRONMENTAL MICROBIOME 2524-6372 21
20.
Sudhakar, Padhmanand ; Jacomin, Anne-Claire ; Hautefort, Isabelle ; Samavedam, Siva ; Fatemian, Koorosh ; Ari, Eszter ; Gul, Leila ; Demeter, Amanda ; Jones, Emily ; Korcsmaros, Tamas et al.
Targeted interplay between bacterial pathogens and host autophagy
AUTOPHAGY 15 : 9 pp. 1620-1633. , 14 p. (2019)
DOI WoS REAL EDIT Scopus PubMed Egyéb URL
Közlemény:30617455 Egyeztetett Forrás Idéző Folyóiratcikk (Szakcikk ) Tudományos
Nyilvános idéző összesen: 54 | Független: 48 | Függő: 6 | Nem jelölt: 0 | WoS jelölt: 37 | Scopus jelölt: 34 | WoS/Scopus jelölt: 39 | DOI jelölt: 46
Szakcikk (Folyóiratcikk) | Tudományos[30617455] [Egyeztetett]
Nyilvános idéző összesen: 54, Független: 48, Függő: 6, Nem jelölt: 0
  1. Li Jie et al. eIF2 alpha signaling regulates autophagy of osteoblasts and the development of osteoclasts in OVX mice. (2019) CELL DEATH AND DISEASE 2041-4889 2041-4889 10 12
  2. Xie Chuan et al. H. Pylori Infection Inhibits Autophagy to Aggravate DNA Damage by P62-Mediated Rad51 Ubiquitination. (2019)
  3. Зубова С. Г.. Многоликость аутофагии и ее неоднозначная роль в биологических процессах. (2019) CITOLOGIJA 0041-3771 3034-6061 61 12 941-950
  4. Bozic Mihaela et al. A conserved ATG2-GABARAP family interaction is critical for phagophore formation. (2020) EMBO REPORTS 1469-221X 1469-3178 21 3
  5. * Sudhakar Padhmanand. Assessment of Ecosystem Services and Capabilities of Communities from different Scales and Niches - Implications on Sustainability Goals. (2020) EUROPEAN JOURNAL OF SUSTAINABLE DEVELOPMENT RESEARCH 2468-1962 2542-4742 4 3
  6. * Sudhakar Padhmanand et al. Computational Biology and Machine Learning Approaches to Study Mechanistic Microbiomehost Interactions. (2020)
  7. Westerhausen Sibel geb.. Development of highly sensitive tools to investigate the Salmonella type III secretion system. (2020)
  8. Fan Shuangqi et al. Dual NDP52 Function in Persistent CSFV Infection. (2020) FRONTIERS IN MICROBIOLOGY 1664-302X 10
  9. Xie Chuan et al. Inhibition of autophagy aggravates DNA damage response and gastric tumorigenesis via Rad51 ubiquitination in response toH. pyloriinfection. (2020) GUT MICROBES 1949-0976 1949-0984 11 6 1567-1589
  10. Thomas David R. et al. Interfering with Autophagy: The Opposing Strategies Deployed by Legionella pneumophila and Coxiella burnetii Effector Proteins. (2020) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 10
  11. * Andrighetti Tahila et al. MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions. (2020) CELLS 2073-4409 9 5
  12. Bowden T.J. et al. Post-translational protein deimination signatures and extracellular vesicles (EVs) in the Atlantic horseshoe crab (Limulus polyphemus). (2020) DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 0145-305X 1879-0089 110
  13. Fan Shuangqi et al. The Role of Autophagy and Autophagy Receptor NDP52 in Microbial Infections. (2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 1661-6596 1422-0067 21 6
  14. Liu Leiling et al. Advances in the role and mechanism of BAG3 in dilated cardiomyopathy. (2021) HEART FAILURE REVIEWS 1382-4147 1573-7322 26 1 183-194
  15. Pirolli Nicholas H. et al. Bacterial Extracellular Vesicles and the Gut‐Microbiota Brain Axis: Emerging Roles in Communication and Potential as Therapeutics. (2021) ADVANCED BIOLOGY 2701-0198 2701-0198 5 7 p. 2000540
  16. * Sudhakar P. et al. Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions. (2021) FRONTIERS IN MICROBIOLOGY 1664-302X 12
  17. Xu Zheng et al. Helicobacter pylori regulates ILK to influence autophagy through Rac1 and RhoA signaling pathways in gastric epithelial cells. (2021) MICROBIAL PATHOGENESIS 0882-4010 1096-1208 158
  18. Zhao W. et al. High pathogenicity island is associated with enhanced autophagy in pathogenic Escherichia coli HPI - infected macrophages. (2021) RESEARCH IN VETERINARY SCIENCE 0034-5288 1532-2661 135 113-120
  19. Han Zhu et al. Model-based analysis uncovers mutations altering autophagy selectivity in human cancer. (2021) NATURE COMMUNICATIONS 2041-1723 2041-1723 12 1
  20. Liu Yang et al. Mycoplasma bovis subverts autophagy to promote intracellular replication in bovine mammary epithelial cells cultured in vitro. (2021) VETERINARY RESEARCH 0928-4249 1297-9716 52 1
  21. Brimson J.M. et al. Plant polyphenols for aging health: Implication from their autophagy modulating properties in age-associated diseases. (2021) PHARMACEUTICALS 1424-8247 14 10
  22. Zhang Wei et al. Rosmarinic acid prevents refractory bacterial pneumonia through regulating Keap1/Nrf2-mediated autophagic pathway and mitochondrial oxidative stress. (2021) FREE RADICAL BIOLOGY AND MEDICINE 0891-5849 1873-4596 168 247-257
  23. Tóth Dávid et al. The interplay between pathogens and Atg8 family proteins: thousand-faced interactions. (2021) FEBS OPEN BIO 2211-5463 2211-5463 11 12 3237-3252
  24. Zheng Q. et al. A dynamically evolving war between autophagy and pathogenic microorganisms. (2022) JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B 1673-1581 1862-1783 23 1 19-41
  25. Zhou Jie et al. Autophagy Protects Ocular Surface Against Overactivated Inflammation by Degrading Retinoic Acid-Induced Gene-I in Human Conjunctival Epithelial Cells. (2022) JOURNAL OF OCULAR PHARMACOLOGY AND THERAPEUTICS 1080-7683 1557-7732 38 5 331-338
  26. Wang Li-Mei et al. CCPG1 involved in corneal Aspergillus fumigatus infection. (2022) INTERNATIONAL JOURNAL OF OPHTHALMOLOGY (ENGLISH EDITION) 2222-3959 2227-4898 15 4 541-546
  27. * Demeter Amanda et al. Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells. (2022) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 12
  28. Mei Si et al. Dysbiosis: The first hit for digestive system cancer. (2022) FRONTIERS IN PHYSIOLOGY 1664-042X 13
  29. * Sudhakar P. et al. Integrated analysis of microbe-host interactions in Crohn's disease reveals potential mechanisms of microbial proteins on host gene expression. (2022) ISCIENCE 2589-0042 25 5
  30. Xue M.-Y. et al. Investigation of fiber utilization in the rumen of dairy cows based on metagenome-assembled genomes and single-cell RNA sequencing. (2022) MICROBIOME 2049-2618 2049-2618 10 1
  31. Brendborg Nicklas. Jellyfish Age Backwards: Nature’s Secrets to Longevity. (2022)
  32. Brendborg Nicklas. La natura e i segreti della longevità: Capire i meccanismi evolutivi dell'invecchiamento per vivere più a lungo. (2022) ISBN:9788845410024
  33. Wang W. et al. Mucosa-Colonizing Microbiota Correlate With Host Autophagy Signaling in Patients With Inflammatory Bowel Disease. (2022) FRONTIERS IN MICROBIOLOGY N/A 1664-302X 13
  34. Xu M. et al. Mycoplasma bovis inhibits autophagy in bovine mammary epithelial cells via a PTEN/PI3K-Akt-mTOR-dependent pathway. (2022) FRONTIERS IN MICROBIOLOGY 1664-302X 13
  35. He Y.-Z. et al. p62/SQSTM1 Participates in the Innate Immune Response of Macrophages Against Candida albicans Infection. (2022) INTERNATIONAL JOURNAL OF DERMATOLOGY AND VENEREOLOGY 2641-8746 2096-5540 5 2 75-81
  36. Fukushima S. et al. Recruitment of LC3 by Campylobacter jejuni to Bacterial Invasion Site on Host Cells via the Rac1-Mediated Signaling Pathway. (2022) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 12
  37. Li Qian et al. Burkholderia pseudomallei BipD hijacks host KLHL9/KLHL13/CUL3 E3 ligase to ubiquitinate IMMT that initiates mitophagy to evade killing. (2023) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015 1
  38. Silva Alison da. Étude de la reconnaissance des Escherichia coli adhérents et invasifs (AIEC) associés à la maladie de Crohn par l'autophagie : identification des récepteurs autophagiques et des facteurs de virulence. (2023)
  39. Yu Hongyan et al. Identification of multifunctionality of grass carp (Ctenopharyngodon idella) TBK1 during bacterial infection. (2023) FISH AND SHELLFISH IMMUNOLOGY 1050-4648 1095-9947 136
  40. Brendborg Nicklas. La Medusa Inmortal (edición Mexicana): Todo Lo Que Hay Que Saber Para Vivir Más Años. (2023) ISBN:9786070798290
  41. Zhou Y. et al. Salmonella Enteritidis RfbD enhances bacterial colonization and virulence through inhibiting autophagy. (2023) MICROBIOLOGICAL RESEARCH 0944-5013 1618-0623 270
  42. Khan Sohrab et al. Antioxidative Sirt1 and the Keap1-Nrf2 Signaling Pathway Impair Inflammation and Positively Regulate Autophagy in Murine Mammary Epithelial Cells or Mammary Glands Infected with Streptococcus uberis. (2024) ANTIOXIDANTS N/A 2076-3921 13 2 p. 171
  43. Nan Dongqi et al. Burkholderia pseudomallei BipD modulates host mitophagy to evade killing. (2024) NATURE COMMUNICATIONS 2041-1723 2041-1723 15 1
  44. Singh Samvedna et al. Computational methods for detection of host-pathogen interactions. (2024) Megjelent: Systems Biology Approaches for Host-Pathogen Interaction Analysis pp. 103-130
  45. Sun Hui-Zeng et al. Microbial Antioxidants and Their Interactions with Gastrointestinal Tract Epithelial Cells in the Cattle. (2024) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  46. Browning Glenn Francis et al. Mollicutes: From Evolution To Pathogenesis, Volume II. (2024)
  47. Zhou Yi et al. Salmonella Enteritidis RfbD interferes with autophagy through REDD1 to promote bacterial survival. (2024) RESEARCH SQUARE : PREPRINT PLATFORM 2693-5015
  48. Jiang Xingyu et al. The role of AbaI quorum sensing molecule synthase in host cell inflammation induced by Acinetobacter baumannii and its effect on zebrafish infection model. (2024) INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 0141-8130 1879-0003 278
  49. Zhang Lu et al. Deciphering the rules of regulated cell death subroutines by in silico methods. (2025) JOURNAL OF ADVANCED RESEARCH 2090-1232 2090-1224 80
  50. Bhark Shun-Je et al. Hijacking the Ubl code: bacterial manipulation of ubiquitin-like proteins. (2025) ESSAYS IN BIOCHEMISTRY 0071-1365 1744-1358 70
  51. Bekale Raymonde B. et al. Immunomodulatory Nanoparticles Induce Autophagy in Macrophages and Reduce Mycobacterium tuberculosis Burden in the Lungs of Mice. (2025) ACS INFECTIOUS DISEASES 2373-8227 2373-8227 11 3 610-625
  52. Chen Yung-Che et al. Increased autophagy activity regulated by LC3B gene promoter DNA methylation is associated with progression to active pulmonary tuberculosis disease. (2025) RESPIRATORY RESEARCH 1465-9921 1465-993X 26 1
  53. Zheng Cheng et al. Porphyromonas gingivalis hijacks mitophagy and lysosomal function to persist in endothelial cells. (2025) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2235-2988 2235-2988 15
  54. Entrenas García Carmen. Interacción patógeno-hospedador en la infección por Salmonella: respuesta inmune porcina, persistencia bacteriana y regulación por microARNs. (2026)
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