https://m2.mtmt.hu/ hun 2026-10-25 12:57 JournalArticle 37447159 VALIDATED true 0 false 2026-10-24T12:41:26.630+0000 2026-10-20T07:00:16.335+0000 2026-08-17T07:40:35.410+0000 true 10014561 Petz Gabriella /api/admin/10014561 Admin true 10014561 2026-10-24T12:40:08.847+0000 2026-10-20T07:00:16.275+0000 true 521 Szuper Admin /api/admin/521 Admin true true false true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle true 10000059 Article true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle /api/subtype/10000059 Szakcikk SubType 101 true 10000059 true 1 /api/category/1 Category true 1 Gashi, N Land-use and depth-dependent assembly of soil microbiomes shapes ecological functions, interaction networks, and phytopathogenic communities across crop and orchard systems true true /api/journal/10052535 REVIEWED true false 10052535 false 10052535 true 2076-3921 Journal FOREIGN 15 8 1017 1017 39 2026 Soil microorganisms are essential for nutrient cycling, plant productivity, and soil health, yet the relative importance of land-use and soil depth in shaping agricultural microbiomes remains poorly understood. This study investigated soil microbial communities across uncultivated land, alfalfa fields, crop systems (feed corn and sweet corn), and orchard systems (walnut and quince) in the Hajdúnánás region of Hungary using shotgun metagenomic sequencing and soil physicochemical analyses. Microbial alpha diversity showed limited variation among land-use systems but declined significantly with soil depth in both bacterial (Kruskal–Wallis, p = 0.00054) and fungal (p = 0.00051) communities. Beta diversity analyses identified soil depth as the primary driver of microbial community composition in both bacterial (R2 = 0.305, p = 0.001) and fungal (R2 = 0.277, p = 0.001) communities. In contrast, land-use significantly influenced only fungal community composition (R2 = 0.250, p = 0.005). Fungal alpha diversity showed significant negative relationships with soil pH and CaCO3, whereas bacterial diversity exhibited only weak correlations. Crop soils contained the highest numbers of unique bacterial and fungal taxa. Functional analyses revealed significant differences in nutrient cycling, plant-growth-related, decomposition, and environmental adaptation functions among land-use systems. In crop soils, topsoil communities were enriched in oxidative stress-related pathways involved in reactive oxygen species detoxification (ROS), redox homeostasis, and stress regulation, whereas subsoil communities showed a greater representation of antioxidant metabolite production functions. Co-occurrence network analyses indicated greater connectivity in perennial systems, particularly alfalfa soils. Analyses of bacterial and fungal species with reported phytopathogenic potential identified stable cores of phytopathogenic species across agricultural systems, with soil pH emerging as the strongest environmental factor associated with the abundance of phytopathogenic species. Overall, soil depth was the primary driver of bacterial and fungal community assembly, whereas land-use primarily shaped fungal community composition and influenced ecological functions, microbial interaction networks, and the distribution of phytopathogenic species. true 2026 true true true false false false GOLD 2026-10-24 true https://doi.org/10.3390/antiox15081017 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 D1 false false false false 2026-11-15T08:41:24.331+0000 Komplex Rendszerek és Mikrobiom-innovációk Közp... (DE / MÉK); Precíziós Növénytermesztési Kutatás-fejlesztési... (DE / MÉK); Élelmiszertechnológiai Intézet (DE / MÉK) 8 40 3 11 0 true Language 10002 /api/language/10002 Angol English true 2 true PersonAuthorship 141187512 /api/authorship/141187512 1 0.091 true false true Gashi N true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187513 /api/authorship/141187513 2 0.091 true false false Dávid P true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187514 /api/authorship/141187514 3 0.091 false false false Author 10094910 /api/author/10094910 Mikolás Maja true true Mikolás M true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187515 /api/authorship/141187515 4 0.091 false false false Author 10104048 /api/author/10104048 Fauszt Péter true true Fauszt P true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187516 /api/authorship/141187516 5 0.091 false false false Gál F true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187517 /api/authorship/141187517 6 0.091 false false false Author 10048826 /api/author/10048826 Rácz Csaba true 10048826 true Rácz Cs true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187518 /api/authorship/141187518 7 0.091 false false false Author 10048599 /api/author/10048599 Molnár Krisztina true 10048599 true Molnár K true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187519 /api/authorship/141187519 8 0.091 false false false Author 10012209 /api/author/10012209 Stündl László true 10012209 true Stündl L true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187520 /api/authorship/141187520 9 0.091 false false false Author 10032955 /api/author/10032955 Gálné Remenyik Judit true 10032955 true Remenyik J true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187521 /api/authorship/141187521 10 0.091 false true false Author 10020301 /api/author/10020301 Dobos Attila Csaba true 10020301 true Dobos A Cs true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 141187522 /api/authorship/141187522 11 0.091 false true false Author 10040142 /api/author/10040142 Paholcsek Melinda true 10040142 true Paholcsek M true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PublicationIdentifier 32807229 /api/publicationidentifier/32807229 PlainSource 6 /api/publicationsource/6 PublicationSourceType 10001 /api/publicationsourcetype/10001 true true true DOI DOI https://doi.org/@@@ true true 6 true GOLD true IDENTICAL 10.3390/antiox15081017 https://doi.org/10.3390/antiox15081017 false true PublicationIdentifier 32836984 /api/publicationidentifier/32836984 PlainSource 38 /api/publicationsource/38 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10.1038/s41467-023-40810-z false true Reference 77405032 /api/reference/77405032 97 10.1128/AEM.00048-21 false true /api/publication/37447159 <div class="JournalArticle Publication long-list"> <div class="authors"> <img title="Forrásközlemény" style="float: left" src="/frontend/resources/grid/publication-core-icon.png"> <img title="Idézőközlemény" style="float: left" src="/frontend/resources/grid/publication-citation-icon.png"> <div class="autype autype0"> <span class="author-name" >Gashi N ✉ </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Dávid P<sup>*</sup> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10094910"><a href="/gui2/?type=authors&mode=browse&sel=10094910" target="_blank">Mikolás M (<span class="authorship-author-name">Mikolás Maja</span> <span class="authorAux-mtmt"> Molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Debreceni Egyetem">DE</span>/<span title="Mezőgazdaság-, Élelmiszertudományi és Környezetgazdálkodási Kar">MÉK</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10104048"><a href="/gui2/?type=authors&mode=browse&sel=10104048" target="_blank">Fauszt P (<span class="authorship-author-name">Fauszt Péter</span> <span class="authorAux-mtmt"> Mikrobiom</span>) </a> </span> <span class="author-affil"><span title="Debreceni Egyetem">DE</span>/<span title="Mezőgazdaság-, Élelmiszertudományi és Környezetgazdálkodási Kar">MÉK</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Gál F </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10048826"><a href="/gui2/?type=authors&mode=browse&sel=10048826" target="_blank">Rácz Cs (<span class="authorship-author-name">Rácz Csaba</span> <span class="authorAux-mtmt"> Agrometeorológia</span>) </a> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10048599"><a href="/gui2/?type=authors&mode=browse&sel=10048599" target="_blank">Molnár K (<span class="authorship-author-name">Molnár Krisztina</span> <span class="authorAux-mtmt"> növénytermesztés</span>) </a> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10012209"><a href="/gui2/?type=authors&mode=browse&sel=10012209" target="_blank">Stündl L (<span class="authorship-author-name">Stündl László</span> <span class="authorAux-mtmt"> Akvakultúra, takarmányozás, élelmiszer technológia</span>) </a> </span> <span class="author-affil"><span title="Debreceni Egyetem">DE</span>/<span title="Mezőgazdaság-, Élelmiszertudományi és Környezetgazdálkodási Kar">MÉK</span>/Élelmiszertechnológiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10032955"><a href="/gui2/?type=authors&mode=browse&sel=10032955" target="_blank">Remenyik J (<span class="authorship-author-name">Gálné Remenyik Judit</span> <span class="authorAux-mtmt"> növényi biokémia</span>) </a> </span> <span class="author-affil"><span title="Debreceni Egyetem">DE</span>/<span title="Mezőgazdaság-, Élelmiszertudományi és Környezetgazdálkodási Kar">MÉK</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10020301"><a href="/gui2/?type=authors&mode=browse&sel=10020301" target="_blank">Dobos A Cs<sup>**</sup> (<span class="authorship-author-name">Dobos Attila Csaba</span> <span class="authorAux-mtmt"> Növénytermesztés</span>) </a> </span> <span class="author-affil"><span title="Debreceni Egyetem">DE</span>/<span title="Mezőgazdaság-, Élelmiszertudományi és Környezetgazdálkodási Kar">MÉK</span>/Precíziós Növénytermesztési Kutatás-fejlesztési Szolgáltató Központ</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10040142"><a href="/gui2/?type=authors&mode=browse&sel=10040142" target="_blank">Paholcsek M (<span class="authorship-author-name">Paholcsek Melinda</span> <span class="authorAux-mtmt"> genetika</span>) </a> </span> <span class="author-affil"><span title="Debreceni Egyetem">DE</span>/<span title="Mezőgazdaság-, Élelmiszertudományi és Környezetgazdálkodási Kar">MÉK</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> </div> </div> <div class="title"><a href="/gui2/?mode=browse&params=publication;37447159" target="_blank">Land-use and depth-dependent assembly of soil microbiomes shapes ecological functions, interaction networks, and phytopathogenic communities across crop and orchard systems</a></div> <div> <span class="journal-title">ANTIOXIDANTS</span> <span class="journal-issn">( <a target="_blank" href="https://portal.issn.org/resource/ISSN/2076-3921">2076-3921</a>)</span>: <span class="journal-volume">15</span> <span class="journal-issue">8</span> <span class="page"> Paper 1017. 39 p. </span> <span class="year">(2026)</span> </div> <div class="pub-footer"> <span class="language" xmlns="http://www.w3.org/1999/html">Nyelv: Angol | </span> <span class="identifiers"> <span class="id identifier oa_GOLD" title=" Gold "> <a style="color:blue" title="10.3390/antiox15081017" target="_blank" href="https://doi.org/10.3390/antiox15081017"> DOI </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="413992" target="_blank" href="http://hdl.handle.net/2437/413992"> DEA </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="001858540400001" target="_blank" href="https://www.webofscience.com/wos/woscc/full-record/001858540400001"> WoS </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="https://www.mdpi.com/2076-3921/15/8/1017" target="_blank" href="https://www.mdpi.com/2076-3921/15/8/1017"> Egyéb URL </a> </span> </span> <OnlyViewableByAuthor><div class="ratings"> <div class="journal-subject">Folyóirat szakterülete: Scopus - Food Science&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;D1</div> <div class="journal-subject">Folyóirat szakterülete: Scopus - Biochemistry&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q1</div> <div class="journal-subject">Folyóirat szakterülete: Scopus - Cell Biology&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q1</div> <div class="journal-subject">Folyóirat szakterülete: Scopus - Clinical Biochemistry&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q1</div> <div class="journal-subject">Folyóirat szakterülete: Scopus - Molecular Biology&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q1</div> <div class="journal-subject">Folyóirat szakterülete: Scopus - Physiology&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q1</div> </div></OnlyViewableByAuthor> <div class="publication-citation"> <a target="_blank" href="/api/publication?cond=citations.related;eq;37447159&sort=publishedYear,desc&sort=title"> Idézett közlemények száma: 4 </a> </div> <div class="mtid"><span class="long-pub-mtid">Közlemény: 37447159</span> | <span class="status-data status-VALIDATED"> Egyeztetett </span> Forrás Idéző | <span class="type-subtype">Folyóiratcikk ( Szakcikk ) </span> | <span class="pub-category">Tudományos</span> | <span class="publication-sourceOfData">WoS-XML</span> </div> <div class="lastModified">Utolsó módosítás: 2026.10.20. 09:00 Szuper Admin (admin) </div> </div></div>