https://m2.mtmt.hu/ eng 2026-08-24 19:57 JournalArticle 35762093 VALIDATED true 0 false 2026-05-24T16:03:27.900+0000 2026-02-10T11:04:39.274+0000 2025-02-15T06:25:49.925+0000 true 10035838 Szulyákné Kovács Mariann /api/admin/10035838 Admin true 10035838 2025-12-28T23:46:53.273+0000 2025-03-16T20:29:00.805+0000 true 521 Szuper Admin /api/admin/521 Admin true true false true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle true 10000059 Article true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle /api/subtype/10000059 Szakcikk SubType 101 true 10000059 true 1 /api/category/1 Category true 1 Szoke, Zsombor Comprehensive analysis of antimicrobial resistance dynamics among broiler and duck intensive production systems true true /api/journal/10019966 REVIEWED true false 10019966 false 10019966 true 2045-2322 Journal FOREIGN 15 1 4673 4673 23 2025 Antimicrobial resistance (AMR) is a global health challenge requiring cross-sector action, with research largely focused on chickens, leaving ducks underexplored. This study examines AMR dynamics in Ross 308 broilers and Cherry Valley ducks over 15 months and 15 stocking periods under consistent rearing conditions. A total of 96 pooled samples were collected: 50 from broiler farms (26 biological, 24 environmental) and 46 from duck farms (24 biological, 22 environmental). Using next-generation shotgun sequencing, 3,665 distinct AMR types were identified: 1,918 in broilers and 1,747 in ducks. Host-specific AMRs comprised 25.3% in broilers and 18% in ducks, while 56.7% were shared. AMR diversity declined across production phases, with broilers losing 641 types and ducks losing 308, yet AMR frequencies increased significantly by the finisher phase ( p < 0.0001). Based on in silico data, prophylactic antibiotic use significantly reduced the prevalence of multidrug-resistant bacteria in both poultry species ( p < 0.05). Hospital-acquired infection-associated AMRs were higher in broilers than in ducks at the start of production but declined significantly by the end of the rearing period ( p < 0.0001). Above-average resistance markers accounted for approximately 10% of all detected resistance determinants. Tetracycline and phenicol resistances emerged as the most prevalent. 13 high-resistance carrier (HRC) species were shared between both hosts. Broiler-specific HRCs exhibited significantly higher abundances (relative frequency: 0.08) than duck-specific HRCs (relative frequency: 0.003, p = 0.035). The grower phase emerged as a critical intervention point. In farm environments 15 broiler-specific and 9 duck-specific biomarker species were identified, each strongly correlated with poultry-core HRCs (correlation coefficient > 0.7). Broiler exhibited higher abundances of key resistance genes, with tetracycline resistance predominantly associated with Bacteroides coprosuis , Pasteurella multocida , and Acinetobacter baumannii . Despite its limitations, this research provides key insights into AMR trends in two major poultry types, guiding targeted interventions and sustainable management strategies. Funding 2049804 /api/funding/2049804 false true true 2025 true true true false true false GOLD 2026-05-24 true https://doi.org/10.1038/s41598-025-89432-z 10 0 10 8 4 10 10 10 6 10 10 8 8 8 2 0 10 8 10 8 0 2 2 Folyóiratcikk Journal Article 24 10 Könyvrészlet Chapter in Book 25 0 Könyv Book 23 0 Egyéb konferenciaközlemény Conference paper 31 0 Egyéb konferenciakötet Conference proceedings 32 0 Oltalmi formák Protection forms 26 0 Disszertáció Thesis 28 0 Egyéb Miscellaneous 29 0 Alkotás Achievement 22 0 Kutatási adat Research data 33 0 Folyóiratcikk Journal Article 24 0 0 0 Könyvrészlet Chapter in Book 25 0 0 0 Könyv Book 23 0 0 0 Egyéb konferenciaközlemény Conference paper 31 0 0 0 Egyéb konferenciakötet Conference proceedings 32 0 0 0 Oltalmi formák Protection forms 26 0 0 0 Disszertáció Thesis 28 0 0 0 Egyéb Miscellaneous 29 0 0 0 Alkotás Achievement 22 0 0 0 Kutatási adat Research data 33 0 0 0 2025 0 5 5 5 5 2026 0 5 3 5 3 Q1 A nemzetközi false 10040142,10012209 false false false 2025-05-16T05:25:55.463+0000 Humángenetikai Tanszék (DE / ÁOK); Komplex Rendszerek és Mikrobiom-innovációk Közp... (DE / MÉK); Állattenyésztési Tanszék (DE / MÉK / ABTI); Állattudományi, Biotechnológiai és Természetvéd... (DE / MÉK) 11 39 4 15 0 true Language 10002 /api/language/10002 Angol English true 2 true PersonAuthorship 123340911 /api/authorship/123340911 1 0.067 true false false Author 10086384 /api/author/10086384 Szőke Zsombor true true Szoke Zsombor true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340912 /api/authorship/123340912 2 0.06666667 false false false Author 10104048 /api/author/10104048 Fauszt Péter true true Fauszt Peter true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340913 /api/authorship/123340913 3 0.067 false false false Author 10094910 /api/author/10094910 Mikolás Maja true true Mikolas Maja true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340914 /api/authorship/123340914 4 0.06666667 false false false David Peter true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340915 /api/authorship/123340915 5 0.067 false false false Author 10060120 /api/author/10060120 Szilágyi-Tolnai Emese true 10060120 true Szilagyi-Tolnai Emese true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340916 /api/authorship/123340916 6 0.067 false false false Author 10063815 /api/author/10063815 Pesti-Asbóth Georgina DUPLUM true 10063815 true Pesti-Asboth Georgina true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340917 /api/authorship/123340917 7 0.067 false false false Author 10051569 /api/author/10051569 Homoki Judit Rita true 10051569 true Homoki Judit Rita true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340918 /api/authorship/123340918 8 0.06666667 false false false Kovacs-Forgacs Ildiko true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340919 /api/authorship/123340919 9 0.06666667 false false false Gal Ferenc true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340920 /api/authorship/123340920 10 0.067 false false false Author 10012209 /api/author/10012209 Stündl László true 10012209 true Stundl Laszlo true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340921 /api/authorship/123340921 11 0.067 false false false Author 10012210 /api/author/10012210 Czeglédi Levente true 10012210 true Czegledi Levente true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340922 /api/authorship/123340922 12 0.06666667 false false false Stagel Aniko true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340923 /api/authorship/123340923 13 0.067 false false false Author 10002717 /api/author/10002717 Biró Sándor true 10002717 true Biro Sandor true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340924 /api/authorship/123340924 14 0.067 false false false Author 10032955 /api/author/10032955 Gálné Remenyik Judit true 10032955 true Remenyik Judit true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 123340925 /api/authorship/123340925 15 0.067 false true true Author 10040142 /api/author/10040142 Paholcsek Melinda true 10040142 true Paholcsek Melinda true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PublicationIdentifier 28406133 /api/publicationidentifier/28406133 PlainSource 6 /api/publicationsource/6 PublicationSourceType 10001 /api/publicationsourcetype/10001 true true true DOI DOI https://doi.org/@@@ true true 6 true GOLD true IDENTICAL 10.1038/s41598-025-89432-z https://doi.org/10.1038/s41598-025-89432-z false true PublicationIdentifier 28406134 /api/publicationidentifier/28406134 PlainSource 38 /api/publicationsource/38 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autype0"> <span class="author-name" mtid="10086384"><a href="/gui2/?type=authors&mode=browse&sel=10086384" target="_blank">Szoke Zsombor (<span class="authorship-author-name">Szőke Zsombor</span> <span class="authorAux-mtmt"> Agrármérnök</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Agricultural and Food Sciences and Environmental Management">Faculty of Agricultural and Food Sciences and Environmental Management</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10104048"><a href="/gui2/?type=authors&mode=browse&sel=10104048" target="_blank">Fauszt Peter (<span class="authorship-author-name">Fauszt Péter</span> <span class="authorAux-mtmt"> Mikrobiom</span>) </a> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10094910"><a href="/gui2/?type=authors&mode=browse&sel=10094910" target="_blank">Mikolas Maja (<span class="authorship-author-name">Mikolás Maja</span> <span class="authorAux-mtmt"> Molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Agricultural and Food Sciences and Environmental Management">Faculty of Agricultural and Food Sciences and Environmental Management</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >David Peter </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10060120"><a href="/gui2/?type=authors&mode=browse&sel=10060120" target="_blank">Szilagyi-Tolnai Emese (<span class="authorship-author-name">Szilágyi-Tolnai Emese</span> <span class="authorAux-mtmt"> Orvostudományok, Agrártudományok</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Agricultural and Food Sciences and Environmental Management">Faculty of Agricultural and Food Sciences and Environmental Management</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10063815"><a href="/gui2/?type=authors&mode=browse&sel=10063815" target="_blank">Pesti-Asboth Georgina (<span class="authorship-author-name">Pesti-Asbóth Georgina</span> <span class="authorAux-mtmt"> Biokémia, redox-homeosztázis</span>) </a> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10051569"><a href="/gui2/?type=authors&mode=browse&sel=10051569" target="_blank">Homoki Judit Rita (<span class="authorship-author-name">Homoki Judit Rita</span> <span class="authorAux-mtmt"> Élelmiszer biokémia</span>) </a> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Kovacs-Forgacs Ildiko </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Gal Ferenc </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10012209"><a href="/gui2/?type=authors&mode=browse&sel=10012209" target="_blank">Stundl Laszlo (<span class="authorship-author-name">Stündl László</span> <span class="authorAux-mtmt"> Akvakultúra, takarmányozás, élelmiszer technológia</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Agricultural and Food Sciences and Environmental Management">Faculty of Agricultural and Food Sciences and Environmental Management</span>/Animal Science, Biotechnology and Nature Conservation</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10012210"><a href="/gui2/?type=authors&mode=browse&sel=10012210" target="_blank">Czegledi Levente (<span class="authorship-author-name">Czeglédi Levente</span> <span class="authorAux-mtmt"> Állattenyésztés</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Agricultural and Food Sciences and Environmental Management">Faculty of Agricultural and Food Sciences and Environmental Management</span>/<span title="Animal Science, Biotechnology and Nature Conservation">ABTI</span>/Állattenyésztési Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Stagel Aniko </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10002717"><a href="/gui2/?type=authors&mode=browse&sel=10002717" target="_blank">Biro Sandor (<span class="authorship-author-name">Biró Sándor</span> <span class="authorAux-mtmt"> Genetika</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Medicine">Faculty of Medicine</span>/Department of Human Genetics</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10032955"><a href="/gui2/?type=authors&mode=browse&sel=10032955" target="_blank">Remenyik Judit (<span class="authorship-author-name">Gálné Remenyik Judit</span> <span class="authorAux-mtmt"> növényi biokémia</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Agricultural and Food Sciences and Environmental Management">Faculty of Agricultural and Food Sciences and Environmental Management</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10040142"><a href="/gui2/?type=authors&mode=browse&sel=10040142" target="_blank">Paholcsek Melinda ✉ (<span class="authorship-author-name">Paholcsek Melinda</span> <span class="authorAux-mtmt"> genetika</span>) </a> </span> <span class="author-affil"><span title="University of Debrecen">UD</span>/<span title="Faculty of Agricultural and Food Sciences and Environmental Management">Faculty of Agricultural and Food Sciences and Environmental Management</span>/Komplex Rendszerek és Mikrobiom-innovációk Központja</span> </div> </div> <div class="title"><a href="/gui2/?mode=browse&params=publication;35762093" target="_blank">Comprehensive analysis of antimicrobial resistance dynamics among broiler and duck intensive production systems</a></div> <div> <span class="journal-title">SCIENTIFIC REPORTS</span> <span class="journal-issn">( <a target="_blank" href="https://portal.issn.org/resource/ISSN/2045-2322">2045-2322</a>)</span>: <span class="journal-volume">15</span> <span class="journal-issue">1</span> <span class="page"> Paper 4673. 23 p. </span> <span class="year">(2025)</span> </div> <div class="pub-footer"> <span class="language" xmlns="http://www.w3.org/1999/html">Language: English | </span> <span class="identifiers"> <span class="id identifier oa_GOLD" title=" Gold "> <a style="color:blue" title="10.1038/s41598-025-89432-z" target="_blank" href="https://doi.org/10.1038/s41598-025-89432-z"> DOI </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="387012" target="_blank" href="http://hdl.handle.net/2437/387012"> DEA </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="001416485500001" target="_blank" href="https://www.webofscience.com/wos/woscc/full-record/001416485500001"> WoS </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="85218208832" target="_blank" href="http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85218208832"> Scopus </a> </span> </span> <OnlyViewableByAuthor><div class="ratings"> <div class="journal-subject">Journal subject: Scopus - Multidisciplinary&nbsp;&nbsp;&nbsp;Rank:&nbsp;Q1</div> <div class="journal-subject">Committee on Sociology HASSELIX SZTB [1901-]&nbsp;&nbsp;&nbsp;A nemzetközi</div> <div class="journal-subject">Committee on Regional Studies HASSELIX RTB [1901-]&nbsp;&nbsp;&nbsp;B nemzetközi</div> </div></OnlyViewableByAuthor> <div class="publication-citation" style="margin-left: 0.5cm;"> <span title="" class="citingPub-count">Citing papers: 10</span> | Independent citation: 8 | Self citation: 2 | Unknown citation: 0 | Number of citations in WoS: 10 | Number of citations in Scopus:&nbsp;6 | WoS/Scopus assigned:&nbsp;10 | Number of citations with DOI:&nbsp;10 </div> <div class="publication-citation"> <a target="_blank" href="/api/publication?cond=citations.related;eq;35762093&sort=publishedYear,desc&sort=title"> Number of cited publications: 2 </a> </div> <div class="mtid"><span class="long-pub-mtid">Publication: 35762093</span> | <span class="status-data status-VALIDATED"> Validated </span> Core Citing | <span class="type-subtype">Journal Article ( Article ) </span> | <span class="pub-category">Scientific</span> | <span class="publication-sourceOfData">kézi felvitel</span> </div> <div class="funder"> (Gróf Tisza István Debreceni Egyetemért Alapítvány Kiválósági PhD Ösztöndíj) </div> <div class="lastModified">Last Modified: 2026.02.10. 12:04 Péter Fauszt (Mikrobiom) </div> </div></div>