https://m2.mtmt.hu/ eng 2026-05-26 00:52 JournalArticle 34109413 VALIDATED true Earlham Institute, Norwich, United Kingdom Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Heidelberg, Germany Department of Morphology and Physiology, Faculty of Health Sciences, Semmelweis University, Budapest, Hungary Quadram Institute, Norwich Research Park, Norwich, United Kingdom Department of Metabolism, Digestion and Reproduction, Imperial College London, London, United Kingdom Department of Molecular Biology, Semmelweis University, Budapest, Hungary ELKH/MTA-ELTE Genetics Research Group, Budapest, Hungary Export Date: 10 October 2023 Correspondence Address: Korcsmáros, T.; Earlham InstituteUnited Kingdom; email: t.korcsmaros@imperial.ac.uk 0 false 2026-05-23T04:03:15.800+0000 2026-01-14T16:07:03.139+0000 2023-08-24T09:46:51.153+0000 true 10020172 INAKTÍV_Sóki xEdit /api/admin/10020172 Admin true 10020172 2026-04-20T13:43:44.829+0000 2024-01-03T08:03:40.853+0000 true 10062250 Molnár-Taga Márta /api/admin/10062250 Admin true 10062250 2024-11-11T12:03:01.346+0000 true 10003134 Wolf György /api/admin/10003134 Admin true 10003134 Admin 10003134 /api/admin/10003134 Wolf György true 10003134 true Admin 10067876 /api/admin/10067876 Ladányi Gusztáv true true 2024-10-17T16:56:06.377+0000 true false true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle true 10000059 Article true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle /api/subtype/10000059 Szakcikk SubType 101 true 10000059 true 1 /api/category/1 Category true 1 Csabai, Luca AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation true true /api/journal/10004714 REVIEWED true false 10004714 false 10004714 true 1554-8627 1554-8635 Journal FOREIGN 20 1 188 201 188 15 2024 Autophagy is a highly-conserved catabolic process eliminating dysfunctional cellular components and invading pathogens. Autophagy malfunction contributes to disorders such as cancer, neurodegenerative and inflammatory diseases. Understanding autophagy regulation in health and disease has been the focus of the last decades. We previously provided an integrated database for autophagy research, the Autophagy Regulatory Network (ARN). For the last seven years, this resource has been used by thousands of users. Here, we present a new and upgraded resource, AutophagyNet. It builds on the previous database but contains major improvements to address user feedback and novel needs due to the advancement in omics data availability. AutophagyNet contains updated interaction curation and integration of over 280,000 experimentally verified interactions between core autophagy proteins and their protein, transcriptional and post-transcriptional regulators as well as their potential upstream pathway connections. AutophagyNet provides annotations for each core protein about their role: 1) in different types of autophagy (mitophagy, xenophagy, etc.); 2) in distinct stages of autophagy (initiation, elongation, termination, etc); 3) with subcellular and tissue-specific localization. These annotations can be used to filter the dataset, providing customizable download options tailored to the user’s needs. The resource is available in various file formats (e.g., CSV, BioPAX and PSI-MI), and data can be analyzed and visualized directly in Cytoscape. The multi-layered regulation of autophagy can be analyzed by combining AutophagyNet with tissue- or cell type-specific using (multi-)omics datasets (e.g. transcriptomic or proteomic data). The resource is publicly accessible at http://autophagynet.org.Competing Interest StatementThe authors have declared no competing interest.ARNAutophagy Regulatory NetworkATGautophagy-related genesBCRB cell receptor pathwayBECN1beclin 1GABARAPgamma-aminobutyric acid receptor-associated proteinIIPinnate immune pathwaylncRNAlong non-coding RNAmiRNAmicroRNANHRnuclear hormone receptor pathwayPTMpost-translational modificationRTKreceptor tyrosine kinase pathwayTCRT cell receptor pathwayTLRToll-like receptor pathway Funding 2030258 /api/funding/2030258 false true Funding 2030259 /api/funding/2030259 false true Funding 2030260 /api/funding/2030260 false true Funding 2030261 /api/funding/2030261 false true true true 2023 true true true false true false GOLD 2026-05-23 true https://doi.org/10.1080/15548627.2023.2247737 5 0 5 4 1 5 5 5 5 5 5 4 4 4 1 0 5 4 5 4 0 6 6 Folyóiratcikk Journal Article 24 5 Könyvrészlet Chapter in Book 25 0 Könyv Book 23 0 Egyéb konferenciaközlemény Conference paper 31 0 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(<span class="authorship-author-name">Farkas Luca Panna</span> <span class="authorAux-mtmt"> Bioinformatika</span>) </a> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10084180"><a href="/gui2/?type=authors&mode=browse&sel=10084180" target="_blank">Bohár Balázs (<span class="authorship-author-name">Bohár Balázs</span> <span class="authorAux-mtmt"> Bioinformatika, hálózat és rendszerbiológia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd University">ELTE</span>/<span title="Faculty of Science">ELU FoS</span>/<span title="Institute of Biology">Bio_I</span>/Department of Genetics</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Türei Dénes </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Prabhu Sowmya </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10045537"><a href="/gui2/?type=authors&mode=browse&sel=10045537" target="_blank">Földvári-Nagy László (<span class="authorship-author-name">Földvári-Nagy László</span> <span class="authorAux-mtmt"> biológia</span>) </a> </span> <span class="author-affil"><span title="Semmelweis University">SU</span>/<span title="Faculty of Health Sciences">FHS</span>/Department of Morphology and Physiology</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Madgwick Matthew </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10033118"><a href="/gui2/?type=authors&mode=browse&sel=10033118" target="_blank">Fazekas Dávid (<span class="authorship-author-name">Fazekas Dávid</span> <span class="authorAux-mtmt"> Biológia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd University">ELTE</span>/<span title="Faculty of Science">ELU FoS</span>/<span title="Institute of Biology">Bio_I</span>/Department of Genetics</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Módos Dezső </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Ölbei Márton </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Halka Themis </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Poletti Martina </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Kornilova Polina </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10060073"><a href="/gui2/?type=authors&mode=browse&sel=10060073" target="_blank">Kadlecsik Tamás (<span class="authorship-author-name">Kadlecsik Tamás</span> <span class="authorAux-mtmt"> Bioinformatika</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd University">ELTE</span>/<span title="Faculty of Science">ELU FoS</span>/Doctoral School of Biology</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Demeter Amanda </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10039715"><a href="/gui2/?type=authors&mode=browse&sel=10039715" target="_blank">Máté Szalay-Bekő (<span class="authorship-author-name">Szalay-Bekő Máté</span> <span class="authorAux-mtmt"> Bioinformatika</span>) </a> </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10026330"><a href="/gui2/?type=authors&mode=browse&sel=10026330" target="_blank">Kapuy Orsolya (<span class="authorship-author-name">Kapuy Orsolya</span> <span class="authorAux-mtmt"> Biokémia</span>) </a> </span> <span class="author-affil"><span title="Semmelweis University">SU</span>/<span title="Faculty of Medicine">FM</span>/<span title="Instituties">I</span>/<span title="Biokémiai és Molekuláris Biológiai Intézet">BMBI</span>/Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10023767"><a href="/gui2/?type=authors&mode=browse&sel=10023767" target="_blank">Lenti Katalin (<span class="authorship-author-name">Földvári-Nagy Lászlóné Lenti Katalin</span> <span class="authorAux-mtmt"> élettan-biokémia</span>) </a> </span> <span class="author-affil"><span title="Semmelweis University">SU</span>/<span title="Faculty of Health Sciences">FHS</span>/Department of Morphology and Physiology</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10003103"><a href="/gui2/?type=authors&mode=browse&sel=10003103" target="_blank">Vellai Tibor (<span class="authorship-author-name">Vellai Tibor</span> <span class="authorAux-mtmt"> Genetika</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd University">ELTE</span>/<span title="Faculty of Science">ELU FoS</span>/<span title="Institute of Biology">Bio_I</span>/Department of Genetics; <span title="Eötvös Loránd University">ELTE</span>/<span title="Faculty of Science">ELU FoS</span>/<span title="Institute of Biology">Bio_I</span>/ELKH-ELTE Genetics Research Group</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Gul Lejla </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10020914"><a href="/gui2/?type=authors&mode=browse&sel=10020914" target="_blank">Korcsmáros Tamás ✉ (<span class="authorship-author-name">Korcsmáros Tamás</span> <span class="authorAux-mtmt"> Rendszerbiológia, bioinformatika</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd University">ELTE</span>/<span title="Faculty of Science">ELU FoS</span>/<span title="Institute of Biology">Bio_I</span>/Department of Genetics</span> </div> </div> <div class="title"><a href="/gui2/?mode=browse&params=publication;34109413" target="_blank">AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation</a></div> <div> <span class="journal-title">AUTOPHAGY</span> <span class="journal-issn">(<a target="_blank" href="https://portal.issn.org/resource/ISSN/1554-8627">1554-8627</a> <a target="_blank" href="https://portal.issn.org/resource/ISSN/1554-8635">1554-8635</a>)</span>: <span class="journal-volume">20</span> <span class="journal-issue">1</span> <span class="page"> pp 188-201 </span> <span class="year">(2024)</span> </div> <div class="pub-footer"> <span class="language" xmlns="http://www.w3.org/1999/html">Language: English | </span> <span class="identifiers"> <span class="id identifier oa_GOLD" title=" Gold "> <a style="color:blue" title="10.1080/15548627.2023.2247737" target="_blank" href="https://doi.org/10.1080/15548627.2023.2247737"> DOI </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="001050975400001" target="_blank" href="https://www.webofscience.com/wos/woscc/full-record/001050975400001"> WoS </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="85168279975" target="_blank" href="http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85168279975"> Scopus </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="37589496" target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=37589496&dopt=Abstract"> PubMed </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="https://www.tandfonline.com/doi/full/10.1080/15548627.2023.2247737" target="_blank" href="https://www.tandfonline.com/doi/full/10.1080/15548627.2023.2247737"> Other URL </a> </span> </span> <OnlyViewableByAuthor><div class="ratings"> <div class="journal-subject">Journal subject: Scopus - Cell Biology&nbsp;&nbsp;&nbsp;Rank:&nbsp;D1</div> <div class="journal-subject">Journal subject: Scopus - Molecular Biology&nbsp;&nbsp;&nbsp;Rank:&nbsp;D1</div> </div></OnlyViewableByAuthor> <div class="publication-citation" style="margin-left: 0.5cm;"> <span title="" class="citingPub-count">Citing papers: 5</span> | Independent citation: 4 | Self citation: 1 | Unknown citation: 0 | Number of citations in WoS: 5 | Number of citations in Scopus:&nbsp;5 | WoS/Scopus assigned:&nbsp;5 | Number of citations with DOI:&nbsp;5 </div> <div class="publication-citation"> <a target="_blank" href="/api/publication?cond=citations.related;eq;34109413&sort=publishedYear,desc&sort=title"> Number of cited publications: 6 </a> </div> <div class="mtid"><span class="long-pub-mtid">Publication: 34109413</span> | <span class="status-data status-VALIDATED"> Validated </span> Core Citing | <span class="type-subtype">Journal Article ( Article ) </span> | <span class="pub-category">Scientific</span> | <span class="publication-sourceOfData">kézi felvitel</span> </div> <div class="funder"> (FK-134267), (K131458), (PD131839), (K132439) Funder: NRDIO </div> <div class="lastModified">Last Modified: 2026.01.14. 17:07 Luca Panna Farkas (Bioinformatika) </div> <div class="lockedBy">Centrally managed 2024.10.17. 18:56 György Wolf (MTMT Központi admin) Gusztáv Ladányi (MTMT API user, admin) </div> <pre class="comment" style="margin-top: 0; margin-bottom: 0;"><u>Comments</u>: Earlham Institute, Norwich, United Kingdom Department of Genetics, ELTE Eötvös Loránd University, Budapest, Hungary Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Heidelberg, Germany Department of Morphology and Physiology, Faculty of Health Sciences,...</pre> </div></div>