https://m2.mtmt.hu/ hun 2026-05-30 14:58 JournalArticle 34067381 VALIDATED true Department of Biochemistry and Molecular Biology, University of Szeged, Szeged, 6726, Hungary Institute of Biochemistry, Biological Research Centre, Szeged, 6726, Hungary Section for Physiology and Cell Biology, Department of Biosciences, University of Oslo, Oslo, 0316, Norway Department of Optics and Quantum Electronics, University of Szeged, Szeged, 6720, Hungary Department of Pathology, Faculty of Medicine, University of Szeged, Szeged, 6720, Hungary Institute of Genetics, Biological Research Centre, Szeged, 6726, Hungary Department of Microbiology and Molecular Medicine, Institute of Genetics and Genomics Geneva, Faculty of Medicine, University of Geneva, Geneva 4, 1211, Switzerland Cited By :1 Export Date: 12 December 2023 CODEN: RNARF Correspondence Address: Villányi, Z.; Department of Biochemistry and Molecular Biology, Hungary; email: villanyi.zoltan@bio.u-szeged.hu Chemicals/CAS: 1,6 hexanediol, 629-11-8; DNA helicase; edetic acid, 150-43-6, 60-00-4; ribonuclease, 59794-03-5, 9001-99-4; transcriptional regulator ATRX; Werner syndrome ATP dependent helicase; RNA, 63231-63-0; Edetic Acid; RecQ Helicases; Ribonucleoproteins; RNA; Saccharomyces cerevisiae Proteins; SGS1 protein, S cerevisiae Funding details: 31003A_172999, NTP-NFTÖ-20-B-0354 Funding details: Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, SNF Funding details: Magyar Tudományos Akadémia, MTA, BO/00878/19/8, BO/902/19, TKP2021-NVA-19 Funding details: Nemzeti Kutatási Fejlesztési és Innovációs Hivatal, NKFI Funding text 1: We are grateful to Dr. Balázs Vedelek and Dr. Zsuzsa Sarkadi for valuable discussions. We thank Jawad Iqbal, Elvira Czvik, Zita Kóra, and Edina Pataki for technical assistance. We are grateful to Blanka Léhy for the graphical abstract. This work was supported by grants GINOP-2.3.2-15-2016-00020 and GINOP-2.3.2-15-2016-00038, as well as by NKFI-K 142961 (Z.V.), ÚNKP-21-5-595-SZTE (Z.V.), and ÚNKP-20-5-SZTE-655 (M.K.) from the Hungarian National Research, Development and Innovation Office. Further support was provided by the János Bolyai Research Scholarship of the Hungarian Academy of Sciences (BO/902/19 for Z.V. and BO/00878/19/8 for M.K.). Superresolu-tion dSTORM experiments and their evaluation were funded by the Hungarian National Research, Development and Innovation Office (TKP2021-NVA-19), Hungarian Brain Research Program (2017-1.2.1-NKP-2017-00002) awarded to M.E., and NTP-NFTÖ-20-B-0354 awarded to D.V., as well as grant 31003A_172999 from the Swiss National Science Foundation awarded to M.A.C. 0 false 2026-05-23T02:27:28.767+0000 2024-04-19T08:31:30.244+0000 2023-07-18T20:31:19.868+0000 true 10028817 Csontné Kiricsi Mónika /api/author/10028817 Author true 10028817 5409546 2026-02-23T21:51:34.875+0000 2026-02-23T22:22:54.080+0000 Author 10062340 /api/author/10062340 Villanyi Zoltan true 10062340 true SUSPECT 2025-04-30T08:54:24.257+0000 2026-02-23T22:22:54.080+0000 2024-03-18T12:33:27.760+0000 true 10073049 Sóki Edina /api/admin/10073049 Admin true Admin 10067876 /api/admin/10067876 Ladányi Gusztáv true true Admin 10014568 /api/admin/10014568 Vándor Andrea true 10014568 true 2024-10-17T16:54:07.820+0000 true false true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle true 10000059 Article true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle /api/subtype/10000059 Szakcikk SubType 101 true 10000059 true 1 /api/category/1 Category true 1 Nemeth-Szatmari, Orsolya Phase-separated ribosome-nascent chain complexes in genotoxic stress response true true /api/journal/9988 REVIEWED true false 9988 false 9988 true 1355-8382 1469-9001 Journal FOREIGN 29 10 1557 1574 1557 18 2023 Assemblysomes are EDTA- and RNase-resistant ribonucleoprotein (RNP) complexes of paused ribosomes with protruding nascent polypeptide chains. They have been described in yeast and human cells for the proteasome subunit Rpt1, and the disordered N-terminal part of the nascent chain was found to be indispensable for the accumulation of the Rpt1-RNP into assemblysomes. Motivated by this, to find other assemblysome-associated RNPs we used bioinformatics to rank subunits of Saccharomyces cerevisiae protein complexes according to their N-terminal disorder propensity. The results revealed that gene products involved in DNA repair are enriched among the top candidates. The Sgs1 DNA helicase was chosen for experimental validation. We found that indeed nascent chains of Sgs1 form EDTA-resistant RNP condensates, assemblysomes by definition. Moreover, upon exposure to UV, SGS1 mRNA shifted from assemblysomes to polysomes, suggesting that external stimuli are regulators of assemblysome dynamics. We extended our studies to human cell lines. The BLM helicase, ortholog of yeast Sgs1, was identified upon sequencing assemblysome-associated RNAs from the MCF7 human breast cancer cell line, and mRNAs encoding DNA repair proteins were overall enriched. Using the radiation-resistant A549 cell line, we observed by transmission electron microscopy that 1,6-hexanediol, an agent known to disrupt phase-separated condensates, depletes ring ribosome structures compatible with assemblysomes from the cytoplasm of cells and makes the cells more sensitive to X-ray treatment. Taken together these findings suggest that assemblysomes may be a component of the DNA damage response from yeast to human. 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true 1312 true Q1 DIRECT true true /api/publication/34067381 <div class="JournalArticle Publication long-list"> <div class="authors"> <img title="Forrásközlemény" style="float: left" src="/frontend/resources/grid/publication-core-icon.png"> <img title="Idézőközlemény" style="float: left" src="/frontend/resources/grid/publication-citation-icon.png"> <div class="autype autype0"> <span class="author-name" mtid="10069846"><a href="/gui2/?type=authors&mode=browse&sel=10069846" target="_blank">Nemeth-Szatmari Orsolya (<span class="authorship-author-name">Szatmári Orsolya</span> <span class="authorAux-mtmt"> Molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10089263"><a href="/gui2/?type=authors&mode=browse&sel=10089263" target="_blank">Nagy-Miko Bence (<span class="authorship-author-name">Nagy-Mikó Bence</span> <span class="authorAux-mtmt"> Molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Doktori Iskolák">DI</span>/Biológia Doktori Iskola; <span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10045634"><a href="/gui2/?type=authors&mode=browse&sel=10045634" target="_blank">Gyorkei Adam (<span class="authorship-author-name">Györkei Ádám</span> <span class="authorAux-mtmt"> biokémia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Biológiai Kutatóközpont">SZBK</span>/Biokémiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10048719"><a href="/gui2/?type=authors&mode=browse&sel=10048719" target="_blank">Varga Daniel (<span class="authorship-author-name">Varga Dániel</span> <span class="authorAux-mtmt"> nagyfeloldású mikroszkópia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Doktori Iskolák">DI</span>/Fizika Doktori Iskola; <span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Fizikai Intézet">FI</span>/Optikai és Kvantumelektronikai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10071753"><a href="/gui2/?type=authors&mode=browse&sel=10071753" target="_blank">H. Kovacs Balint Barna (<span class="authorship-author-name">H. Kovács Bálint Barna</span> <span class="authorAux-mtmt"> Mikroszkópia, optika</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Doktori Iskolák">DI</span>/Fizika Doktori Iskola; <span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Fizikai Intézet">FI</span>/Optikai és Kvantumelektronikai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10054252"><a href="/gui2/?type=authors&mode=browse&sel=10054252" target="_blank">Igaz Nora (<span class="authorship-author-name">Igaz Nóra</span> <span class="authorAux-mtmt"> molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10089285"><a href="/gui2/?type=authors&mode=browse&sel=10089285" target="_blank">Bognar Bence (<span class="authorship-author-name">Bognár Bence</span> <span class="authorAux-mtmt"> info-bionika (molekuláris biológia, mikrobiológia)</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10023650"><a href="/gui2/?type=authors&mode=browse&sel=10023650" target="_blank">Razga Zsolt (<span class="authorship-author-name">Rázga Zsolt</span> <span class="authorAux-mtmt"> Farmakológia, funkcionális morfológia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Szent-Györgyi Albert Orvostudományi Kar">SZAOK</span>/Pathologiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10077384"><a href="/gui2/?type=authors&mode=browse&sel=10077384" target="_blank">Nagy Gabor (<span class="authorship-author-name">Nagy Gábor</span> <span class="authorAux-mtmt"> bioinformatika</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10019404"><a href="/gui2/?type=authors&mode=browse&sel=10019404" target="_blank">Zsindely Nora (<span class="authorship-author-name">Zsindely Nóra</span> <span class="authorAux-mtmt"> Molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10019011"><a href="/gui2/?type=authors&mode=browse&sel=10019011" target="_blank">Bodai Laszlo (<span class="authorship-author-name">Bodai László</span> <span class="authorAux-mtmt"> Molekuláris biológia, epigenetika</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10025198"><a href="/gui2/?type=authors&mode=browse&sel=10025198" target="_blank">Papp Balazs (<span class="authorship-author-name">Papp Balázs</span> <span class="authorAux-mtmt"> biokémia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Biológiai Kutatóközpont">SZBK</span>/Biokémiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10026857"><a href="/gui2/?type=authors&mode=browse&sel=10026857" target="_blank">Erdelyi Miklos (<span class="authorship-author-name">Erdélyi Miklós</span> <span class="authorAux-mtmt"> Optika, mikroszkópia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Fizikai Intézet">FI</span>/Optikai és Kvantumelektronikai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10028817"><a href="/gui2/?type=authors&mode=browse&sel=10028817" target="_blank">Kiricsi Monika (<span class="authorship-author-name">Csontné Kiricsi Mónika</span> <span class="authorAux-mtmt"> Biokémia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10013802"><a href="/gui2/?type=authors&mode=browse&sel=10013802" target="_blank">Blastyak Andras (<span class="authorship-author-name">Blastyák András</span> <span class="authorAux-mtmt"> genetika</span>) </a> </span> <span class="author-affil"><span title="Szegedi Biológiai Kutatóközpont">SZBK</span>/Genetikai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Collart Martine A </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10000502"><a href="/gui2/?type=authors&mode=browse&sel=10000502" target="_blank">Boros Imre Miklos (<span class="authorship-author-name">Boros Imre Miklós</span> <span class="authorAux-mtmt"> Molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10062340"><a href="/gui2/?type=authors&mode=browse&sel=10062340" target="_blank">Villanyi Zoltan ✉ (<span class="authorship-author-name">Villanyi Zoltan</span> <span class="authorAux-mtmt"> Biokémia es molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Természettudományi és Informatikai Kar">TTIK</span>/<span title="Biológia Intézet">BI</span>/Biokémiai és Molekuláris Biológiai Tanszék</span> </div> </div> <div class="title"><a href="/gui2/?mode=browse&params=publication;34067381" target="_blank">Phase-separated ribosome-nascent chain complexes in genotoxic stress response</a></div> <div> <span class="journal-title">RNA-A PUBLICATION OF THE RNA SOCIETY</span> <span class="journal-issn">(<a target="_blank" href="https://portal.issn.org/resource/ISSN/1355-8382">1355-8382</a> <a target="_blank" href="https://portal.issn.org/resource/ISSN/1469-9001">1469-9001</a>)</span>: <span class="journal-volume">29</span> <span class="journal-issue">10</span> <span class="page"> pp 1557-1574 </span> <span class="year">(2023)</span> </div> <div class="pub-footer"> <span class="language" xmlns="http://www.w3.org/1999/html">Nyelv: Angol | </span> <span class="identifiers"> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="10.1261/rna.079755.123" target="_blank" href="https://doi.org/10.1261/rna.079755.123"> DOI </a> </span> <span class="id identifier oa_RESTRICTED" title=" Korlátozott "> <a style="color:black" title="177138" target="_blank" href="http://real.mtak.hu/177138"> REAL </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="MEDLINE:37460154" target="_blank" href="https://www.webofscience.com/wos/woscc/full-record/MEDLINE:37460154"> WoS </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="85171807700" target="_blank" href="http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85171807700"> Scopus </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="37460154" target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=37460154&dopt=Abstract"> PubMed </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:black" title="http://rnajournal.cshlp.org/lookup/doi/10.1261/rna.079755.123" target="_blank" href="http://rnajournal.cshlp.org/lookup/doi/10.1261/rna.079755.123"> Egyéb URL </a> </span> <span class="id identifier oa_GREEN" title=" Green "> <a style="color:blue" title="27910" target="_blank" href="http://publicatio.bibl.u-szeged.hu/27910"> SZTE Publicatio </a> </span> </span> <OnlyViewableByAuthor><div class="ratings"> <div class="journal-subject">Folyóirat szakterülete: Scopus - Molecular Biology&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q1</div> </div></OnlyViewableByAuthor> <div class="publication-citation" style="margin-left: 0.5cm;"> <span title="Nyilvános idézőközlemények összesen, említések nélkül" class="citingPub-count">Nyilvános idéző összesen: 4</span> | Független: 1 | Függő: 3 | Nem jelölt: 0 | WoS jelölt: 4 | Scopus jelölt:&nbsp;4 | WoS/Scopus jelölt:&nbsp;4 | DOI jelölt:&nbsp;4 </div> <div class="publication-citation"> <a target="_blank" href="/api/publication?cond=citations.related;eq;34067381&sort=publishedYear,desc&sort=title"> Idézett közlemények száma: 5 </a> </div> <div class="mtid"><span class="long-pub-mtid">Közlemény: 34067381</span> | <span class="status-data status-VALIDATED"> Egyeztetett </span> Forrás Idéző Duplumgyanú | <span class="type-subtype">Folyóiratcikk ( Szakcikk ) </span> | <span class="pub-category">Tudományos</span> | <span class="publication-sourceOfData">kézi felvitel</span> </div> <div class="funder"> (TKP2021-NVA-19) Támogató: Innovációs és Technológiai Minisztérium </div> <div class="duplumMark">Duplumjelölés: 2026.02.23. 22:50 (Villanyi Zoltan (Biokémia es molekuláris biológia)) </div> <div class="lastModified">Utolsó módosítás: 2024.04.19. 10:31 Sóki Edina (SZTE admin5) </div> <div class="lockedBy">Központi kezelésű 2024.10.17. 18:54 Ladányi Gusztáv (MTMT API user, admin) Vándor Andrea (VA, admin) </div> <pre class="comment" style="margin-top: 0; margin-bottom: 0;"><u>Megjegyzés</u>: Department of Biochemistry and Molecular Biology, University of Szeged, Szeged, 6726, Hungary Institute of Biochemistry, Biological Research Centre, Szeged, 6726, Hungary Section for Physiology and Cell Biology, Department of Biosciences, University of Oslo, Oslo, 0316, Norway Department of Optics and Quantum Electronics, U...</pre> </div></div>