https://m2.mtmt.hu/ hun 2026-04-30 05:40 JournalArticle 32829208 ADMIN_APPROVED true Funding Agency and Grant Number: National Research, Development and Innovation Fund of Hungary [K120391, K138937, K125340, PD135510, 2017-1.2.1-NKP-2017-00002]; SOLEIL Synchrotron, France [20181890, 20191810, 20200751]; Institute for Protein Research, Osaka University; Japan Society for the Promotion of Science; [2019-2.1.11-TET-2019-00079]; [2018-2.1.17-TETKR-2018-00008]; [2019-2.1.6-NEMZ KI-2019-00012]; [2019-2.1.11-TET-2020-00101] Funding text: National Research, Development and Innovation Fund of Hungary [K120391, K138937, K125340, PD135510, 2017-1.2.1-NKP-2017-00002]; International Collaboration [2019-2.1.11-TET-2019-00079, 2018-2.1.17-TETKR-2018-00008, 2019-2.1.6-NEMZ KI-2019-00012, 2019-2.1.11-TET-2020-00101]; SOLEIL Synchrotron, France [20181890, 20191810, 20200751]; Institute for Protein Research, Osaka University; Japan Society for the Promotion of Science, Core-to-Core Program A (Advanced Research Networks to Y.G.). Funding for open access charge: National Research, Development and Innovation Fund of Hungary [K120391, K138937, PD 135510]. 0 false 2026-04-23T13:30:41.070+0000 2023-02-09T18:00:30.698+0000 2022-05-18T11:54:19.954+0000 true 10019782 Csámer Iván /api/admin/10019782 Admin true 10019782 2026-04-09T13:10:22.046+0000 2023-02-09T18:00:30.970+0000 true 10071503 Szabó Regina /api/admin/10071503 Admin true true false true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle true 10000059 Article true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle /api/subtype/10000059 Szakcikk SubType 101 true 10000059 true 1 /api/category/1 Category true 1 Micsonai, András BeStSel webserver for secondary structure and fold prediction for protein CD spectroscopy true true /api/journal/3431 REVIEWED true false 3431 false 3431 true 0305-1048 1362-4962 Journal FOREIGN 50 W1 W90 W98 W90 9 2022 Circular dichroism (CD) spectroscopy is widely used to characterize the secondary structure composition of proteins. To derive accurate and detailed structural information from the CD spectra, we have developed the Beta Structure Selection (BeStSel) method (PNAS, 112, E3095), which can handle the spectral diversity of β-structured proteins. The BeStSel webserver provides this method with useful accessories to the community with the main goal to analyze single or multiple protein CD spectra. Uniquely, BeStSel provides information on eight secondary structure components including parallel β-structure and antiparallel β-sheets with three different groups of twist. It overperforms any available method in accuracy and information content, moreover, it is capable of predicting the protein fold down to the topology/homology level of the CATH classification. A new module of the webserver helps to distinguish intrinsically disordered proteins by their CD spectrum. Secondary structure calculation for uploaded PDB files will help the experimental verification of protein MD and in silico modelling using CD spectroscopy. The server also calculates extinction coefficients from the primary sequence for CD users to determine the accurate protein concentrations which is a prerequisite for reliable secondary structure determination. 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false false false Author 10020510 /api/author/10020510 Molnár Tamás true 10020510 true Molnár Tamás true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 101731488 /api/authorship/101731488 9 0.083333336 false false false Réfrégiers Matthieu true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 101731489 /api/authorship/101731489 10 0.083333336 false false false Goto Yuji true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 101731490 /api/authorship/101731490 11 0.083 false false false Author 10011280 /api/author/10011280 Tantos Ágnes true 10011280 true Tantos Ágnes true false false AuthorshipType 1 /api/authorshiptype/1 0 true 0 true false true PersonAuthorship 101731491 /api/authorship/101731491 12 0.083 false true true Author 10014881 /api/author/10014881 Kardos József true 10014881 true Kardos József true false false AuthorshipType 1 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true 3 true IDENTICAL 85133283102 http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85133283102 false true PublicationIdentifier 20998246 /api/publicationidentifier/20998246 PlainSource 17 /api/publicationsource/17 PublicationSourceType 10003 /api/publicationsourcetype/10003 false true true PubMed PubMed http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=@@@&dopt=Abstract true true 17 true IDENTICAL 35544232 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=35544232&dopt=Abstract false true SjrRating 11284756 /api/sjrrating/11284756 6 0.1 journal RatingType 10002 /api/ratingtype/10002 sjr true true ClassificationExternal 1311 /api/classificationexternal/1311 true 1311 true D1 DIRECT true true /api/publication/32829208 <div class="JournalArticle Publication long-list"> <div class="authors"> <img title="Forrásközlemény" style="float: left" src="/frontend/resources/grid/publication-core-icon.png"> <img title="Idézőközlemény" style="float: left" src="/frontend/resources/grid/publication-citation-icon.png"> <div class="autype autype0"> <span class="author-name" mtid="10020440"><a href="/gui2/?type=authors&mode=browse&sel=10020440" target="_blank">Micsonai András (<span class="authorship-author-name">Micsonai András</span> <span class="authorAux-mtmt"> biokémia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd Tudományegyetem">ELTE</span>/<span title="Természettudományi Kar">TTK</span>/<span title="Biológiai Intézet">Bio_I</span>/MTA-ELTE-NAP B Neuroimmunológiai Kutatócsoport</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10071915"><a href="/gui2/?type=authors&mode=browse&sel=10071915" target="_blank">Moussong Éva (<span class="authorship-author-name">Moussong Éva</span> <span class="authorAux-mtmt"> Biológia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd Tudományegyetem">ELTE</span>/<span title="Természettudományi Kar">TTK</span>/<span title="Biológiai Intézet">Bio_I</span>/MTA-ELTE-NAP B Neuroimmunológiai Kutatócsoport</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Wien Frank </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10052184"><a href="/gui2/?type=authors&mode=browse&sel=10052184" target="_blank">Boros Eszter (<span class="authorship-author-name">Boros Eszter</span> <span class="authorAux-mtmt"> biokémia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd Tudományegyetem">ELTE</span>/<span title="Természettudományi Kar">TTK</span>/<span title="Biológiai Intézet">Bio_I</span>/Biokémiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10060274"><a href="/gui2/?type=authors&mode=browse&sel=10060274" target="_blank">Vadászi Henrietta (<span class="authorship-author-name">Vadászi Henrietta</span> <span class="authorAux-mtmt"> kémia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd Tudományegyetem">ELTE</span>/<span title="Természettudományi Kar">TTK</span>/<span title="Biológiai Intézet">Bio_I</span>/MTA-ELTE-NAP B Neuroimmunológiai Kutatócsoport</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10060353"><a href="/gui2/?type=authors&mode=browse&sel=10060353" target="_blank">Murvai Nikoletta (<span class="authorship-author-name">Murvai Nikoletta</span> <span class="authorAux-mtmt"> Molekuláris biológia</span>) </a> </span> <span class="author-affil"><span title="Természettudományi Kutatóközpont">TTK</span>/Enzimológiai Intézet; <span title="Eötvös Loránd Tudományegyetem">ELTE</span>/<span title="Természettudományi Kar">TTK</span>/<span title="Biológiai Intézet">Bio_I</span>/Biokémiai Tanszék</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Lee Young-Ho </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10020510"><a href="/gui2/?type=authors&mode=browse&sel=10020510" target="_blank">Molnár Tamás (<span class="authorship-author-name">Molnár Tamás</span> <span class="authorAux-mtmt"> Biokémia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd Tudományegyetem">ELTE</span>/<span title="Természettudományi Kar">TTK</span>/<span title="Biológiai Intézet">Bio_I</span>/MTA-ELTE-NAP B Neuroimmunológiai Kutatócsoport</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Réfrégiers Matthieu </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" >Goto Yuji </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10011280"><a href="/gui2/?type=authors&mode=browse&sel=10011280" target="_blank">Tantos Ágnes (<span class="authorship-author-name">Tantos Ágnes</span> <span class="authorAux-mtmt"> Molekuláris Biológia</span>) </a> </span> <span class="author-affil"><span title="Természettudományi Kutatóközpont">TTK</span>/Enzimológiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10014881"><a href="/gui2/?type=authors&mode=browse&sel=10014881" target="_blank">Kardos József ✉ (<span class="authorship-author-name">Kardos József</span> <span class="authorAux-mtmt"> Biológia</span>) </a> </span> <span class="author-affil"><span title="Eötvös Loránd Tudományegyetem">ELTE</span>/<span title="Természettudományi Kar">TTK</span>/<span title="Biológiai Intézet">Bio_I</span>/MTA-ELTE-NAP B Neuroimmunológiai Kutatócsoport</span> </div> </div> <div class="title"><a href="/gui2/?mode=browse&params=publication;32829208" target="_blank">BeStSel webserver for secondary structure and fold prediction for protein CD spectroscopy</a></div> <div> <span class="journal-title">NUCLEIC ACIDS RESEARCH</span> <span class="journal-issn">(<a target="_blank" href="https://portal.issn.org/resource/ISSN/0305-1048">0305-1048</a> <a target="_blank" href="https://portal.issn.org/resource/ISSN/1362-4962">1362-4962</a>)</span>: <span class="journal-volume">50</span> <span class="journal-issue">W1</span> <span class="page"> pp W90-W98 </span> <span class="year">(2022)</span> </div> <div class="pub-footer"> <span class="language" xmlns="http://www.w3.org/1999/html">Nyelv: Angol | </span> <span class="identifiers"> <span class="id identifier oa_GOLD" title=" Gold "> <a style="color:blue" title="10.1093/nar/gkac345" target="_blank" href="https://doi.org/10.1093/nar/gkac345"> DOI </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="000793412900001" target="_blank" href="https://www.webofscience.com/wos/woscc/full-record/000793412900001"> WoS </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="85133283102" target="_blank" href="http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85133283102"> Scopus </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="35544232" target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=35544232&dopt=Abstract"> PubMed </a> </span> </span> <OnlyViewableByAuthor><div class="ratings"> <div class="journal-subject">Folyóirat szakterülete: Scopus - Genetics&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;D1</div> </div></OnlyViewableByAuthor> <div class="publication-citation" style="margin-left: 0.5cm;"> <span title="Nyilvános idézőközlemények összesen, említések nélkül" class="citingPub-count">Nyilvános idéző összesen: 345</span> | Független: 335 | Függő: 10 | Nem jelölt: 0 | WoS jelölt: 338 | Scopus jelölt:&nbsp;314 | WoS/Scopus jelölt:&nbsp;345 | DOI jelölt:&nbsp;345 </div> <div class="publication-citation"> <a target="_blank" href="/api/publication?cond=citations.related;eq;32829208&sort=publishedYear,desc&sort=title"> Idézett közlemények száma: 7 </a> </div> <div class="mtid"><span class="long-pub-mtid">Közlemény: 32829208</span> | <span class="status-data status-ADMIN_APPROVED"> Admin láttamozott </span> Forrás Idéző | <span class="type-subtype">Folyóiratcikk ( Szakcikk ) </span> | <span class="pub-category">Tudományos</span> | <span class="publication-sourceOfData">kézi felvitel</span> </div> <div class="lastModified">Utolsó módosítás: 2023.02.09. 19:00 Szabó Regina (ELTE TTK admin 5) </div> <pre class="comment" style="margin-top: 0; margin-bottom: 0;"><u>Megjegyzés</u>: Funding Agency and Grant Number: National Research, Development and Innovation Fund of Hungary [K120391, K138937, K125340, PD135510, 2017-1.2.1-NKP-2017-00002]; SOLEIL Synchrotron, France [20181890, 20191810, 20200751]; Institute for Protein Research, Osaka University; Japan Society for the Promotion of Science; [2019-2.1.11-TET-2019-00079]; [2018-2.1.17-TETKR-2018-00008]; [2019-2.1.6-NEMZ K...</pre> </div></div>