https://m2.mtmt.hu/ hun 2026-05-01 19:08 JournalArticle 32111160 APPROVED true Funding Agency and Grant Number: Berta Kamprad Foundation; Mats and Stefan Paulsson Trust, Lund, Sweden; National Research Foundation of Korea (MSIP) [2015K1A1A2028365]; Thermo Fisher Scientific; European Cancer Moonshot Center in Lund; U.S. National Cancer Institute's International Cancer Proteogenome Consortium (ICPC); Federal University of Rio de Janeiro, Brazil [CAPES 88887.130697, CNPq 440613/2016-7, 308341-2019-8, FAPERJ E26/210.173/2018]; Brazilian foundation CAPES; Hungarian Academy of Sciences (OTKA-NKFI) [K-125509] Funding text: This study was supported by grants from the Berta Kamprad Foundation, the Mats and Stefan Paulsson Trust, Lund, Sweden, and the National Research Foundation of Korea (MSIP; 2015K1A1A2028365). We would like to thank Thermo Fisher Scientific for their generous support and Liconic UK, for Biobanking support. This work was done under the auspices of a Memorandum of Understanding between the European Cancer Moonshot Center in Lund and the U.S. National Cancer Institute's International Cancer Proteogenome Consortium (ICPC). ICPC encourages international cooperation among institutions and nations in proteogenomic cancer research in which proteogenomic datasets are made available to the public. This work was also done in collaboration with the U.S. National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium (CPTAC). The study was also conducted under the Memorandum of Understanding between the Federal University of Rio de Janeiro, Brazil (grants CAPES 88887.130697, CNPq 440613/2016-7 and 308341-2019-8, and FAPERJ E26/210.173/2018 to G.B.), and Lund University, Sweden. We thank the Brazilian foundation CAPES for the scholarship to N.Wand acknowledge the support to I.B.N by the Hungarian Academy of Sciences (OTKA-NKFI, K-125509). 0 false 2026-04-20T11:04:19.080+0000 2025-02-25T22:42:57.358+0000 2021-07-23T08:53:17.874+0000 true 10063824 Cakir Ugur /api/author/10063824 Author true 10063824 2026-01-22T13:39:53.599+0000 Admin 10014568 /api/admin/10014568 Vándor Andrea true 10014568 true 2022-09-08T06:43:42.919+0000 true false true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle true 10000359 Study Group true 24 24 /api/publicationtype/24 PublicationType 1 true 24 JournalArticle /api/subtype/10000359 Sokszerzős vagy csoportos szerzőségű szakcikk SubType 104 true 10000359 true 1 /api/category/1 Category true 1 Betancourt, Lazaro Hiram The Human Melanoma Proteome Atlas—Complementing the melanoma transcriptome true true /api/journal/10044311 REVIEWED true false 10044311 false 10044311 true 2001-1326 2001-1326 Journal FOREIGN 11 7 e451 e451 25 2021 The MM500 meta‐study aims to establish a knowledge basis of the tumor proteome to serve as a complement to genome and transcriptome studies. Somatic mutations and their effect on the transcriptome have been extensively characterized in melanoma. However, the effects of these genetic changes on the proteomic landscape and the impact on cellular processes in melanoma remain poorly understood. In this study, the quantitative mass‐spectrometry‐based proteomic analysis is interfaced with pathological tumor characterization, and associated with clinical data. The melanoma proteome landscape, obtained by the analysis of 505 well‐annotated melanoma tumor samples, is defined based on almost 16 000 proteins, including mutated proteoforms of driver genes. More than 50 million MS/MS spectra were analyzed, resulting in approximately 13,6 million peptide spectrum matches (PSMs). Altogether 13 176 protein‐coding genes, represented by 366 172 peptides, in addition to 52 000 phosphorylation sites, and 4 400 acetylation sites were successfully annotated. This data covers 65% and 74% of the predicted and identified human proteome, respectively. A high degree of correlation (Pearson, up to 0.54) with the melanoma transcriptome of the TCGA repository, with an overlap of 12 751 gene products, was found.</jats:p><jats:p>Mapping of the expressed proteins with quantitation, spatiotemporal localization, mutations, splice isoforms, and PTM variants was proven not to be predicted by genome sequencing alone. The melanoma tumor molecular map was complemented by analysis of blood protein expression, including data on proteins regulated after immunotherapy. By adding these key proteomic pillars, the MM500 study expands the knowledge on melanoma disease. 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class="author-name" >Betancourt Lazaro Hiram ✉ </span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10048941"><a href="/gui2/?type=authors&mode=browse&sel=10048941" target="_blank">Doma Viktória (<span class="authorship-author-name">Doma Viktória</span> <span class="authorAux-mtmt"> dermatológia, onkológia</span>) </a> </span> <span class="author-affil"><span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Klinikum">K</span>/Bőr-, Nemikórtani és Bőronkológiai Klinika; <span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Intézet">I</span>/II. Sz. Patológiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10063824"><a href="/gui2/?type=authors&mode=browse&sel=10063824" target="_blank">Çakır Uğur (<span class="authorship-author-name">Cakir Ugur</span> <span class="authorAux-mtmt"> Bőrgyógyászat</span>) </a> </span> <span class="author-affil"><span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Klinikum">K</span>/Bőr-, Nemikórtani és Bőronkológiai Klinika</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10074938"><a href="/gui2/?type=authors&mode=browse&sel=10074938" target="_blank">Szeitz Beáta (<span class="authorship-author-name">Szeitz Beáta</span> <span class="authorAux-mtmt"> Patológia</span>) </a> </span> <span class="author-affil"><span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Klinikum">K</span>/Belgyógyászati és Onkológiai Klinika</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10030964"><a href="/gui2/?type=authors&mode=browse&sel=10030964" target="_blank">Horvath Peter (<span class="authorship-author-name">Horváth Péter</span> <span class="authorAux-mtmt"> biokémia,informatika</span>) </a> </span> <span class="author-affil"><span title="Szegedi Biológiai Kutatóközpont">SZBK</span>/Biokémiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10023803"><a href="/gui2/?type=authors&mode=browse&sel=10023803" target="_blank">Szász A. Marcell (<span class="authorship-author-name">Szász Attila Marcell</span> <span class="authorAux-mtmt"> emlőpatologia</span>) </a> </span> <span class="author-affil"><span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Intézet">I</span>/Bioinformatika Tanszék; <span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Klinikum">K</span>/Belgyógyászati és Onkológiai Klinika</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10000584"><a href="/gui2/?type=authors&mode=browse&sel=10000584" target="_blank">Tímár József (<span class="authorship-author-name">Tímár József</span> <span class="authorAux-mtmt"> Rákkutatás, daganatpathológia</span>) </a> </span> <span class="author-affil"><span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Intézet">I</span>/II. Sz. Patológiai Intézet</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10002737"><a href="/gui2/?type=authors&mode=browse&sel=10002737" target="_blank">Kárpáti Sarolta (<span class="authorship-author-name">Kárpáti Sarolta</span> <span class="authorAux-mtmt"> Bõrgyógyászat, genetika</span>) </a> </span> <span class="author-affil"><span title="Semmelweis Egyetem">SE</span>/<span title="Általános Orvostudományi Kar">AOK</span>/<span title="Klinikum">K</span>/Bőr-, Nemikórtani és Bőronkológiai Klinika</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10074633"><a href="/gui2/?type=authors&mode=browse&sel=10074633" target="_blank">Szadai Leticia (<span class="authorship-author-name">Szadai Leticia</span> <span class="authorAux-mtmt"> bőrgyógyászat</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Szent-Györgyi Albert Orvostudományi Kar">SZAOK</span>/Bőrgyógyászati és Allergológiai Klinika</span> ;&nbsp;&nbsp;&nbsp; <span class="author-name" mtid="10026124"><a href="/gui2/?type=authors&mode=browse&sel=10026124" target="_blank">Németh István Balázs (<span class="authorship-author-name">Németh István Balázs</span> <span class="authorAux-mtmt"> pathologia, bőrgyógyászat</span>) </a> </span> <span class="author-affil"><span title="Szegedi Tudományegyetem">SZTE</span>/<span title="Szent-Györgyi Albert Orvostudományi Kar">SZAOK</span>/Bőrgyógyászati és Allergológiai Klinika</span> ;&nbsp;&nbsp;&nbsp; et al. (57) </div> <div><a target="_blank" href="/api/publication/32111160?labelLang=hun">Összes szerző</a></div> </div> <div class="title"><a href="/gui2/?mode=browse&params=publication;32111160" target="_blank">The Human Melanoma Proteome Atlas—Complementing the melanoma transcriptome</a></div> <div> <span class="journal-title">CLINICAL AND TRANSLATIONAL MEDICINE</span> <span class="journal-issn">(<a target="_blank" href="https://portal.issn.org/resource/ISSN/2001-1326">2001-1326</a> <a target="_blank" href="https://portal.issn.org/resource/ISSN/2001-1326">2001-1326</a>)</span>: <span class="journal-volume">11</span> <span class="journal-issue">7</span> <span class="page"> Paper e451. 25 p. </span> <span class="year">(2021)</span> </div> <div class="pub-footer"> <span class="language" xmlns="http://www.w3.org/1999/html">Nyelv: Angol | </span> <span class="identifiers"> <span class="id identifier oa_GOLD" title=" Gold "> <a style="color:blue" title="10.1002/ctm2.451" target="_blank" href="https://doi.org/10.1002/ctm2.451"> DOI </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="000678754500005" target="_blank" href="https://www.webofscience.com/wos/woscc/full-record/000678754500005"> WoS </a> </span> <span class="id identifier oa_GOLD" title=" Gold "> <a style="color:black" title="137144" target="_blank" href="http://real.mtak.hu/137144"> REAL </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="85111507464" target="_blank" href="http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85111507464"> Scopus </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="34323402" target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=34323402&dopt=Abstract"> PubMed </a> </span> <span class="id identifier oa_GREEN" title=" Green "> <a style="color:blue" title="24712" target="_blank" href="http://publicatio.bibl.u-szeged.hu/24712"> SZTE Publicatio </a> </span> </span> <OnlyViewableByAuthor><div class="ratings"> <div class="journal-subject">Folyóirat szakterülete: Scopus - Medicine (miscellaneous)&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q4</div> <div class="journal-subject">Folyóirat szakterülete: Scopus - Molecular Medicine&nbsp;&nbsp;&nbsp;SJR indikátor:&nbsp;Q4</div> </div></OnlyViewableByAuthor> <div class="publication-citation" style="margin-left: 0.5cm;"> <span title="Nyilvános idézőközlemények összesen, említések nélkül" class="citingPub-count">Nyilvános idéző összesen: 32</span> | Független: 14 | Függő: 18 | Nem jelölt: 0 | WoS jelölt: 29 | Scopus jelölt:&nbsp;27 | WoS/Scopus jelölt:&nbsp;32 | DOI jelölt:&nbsp;32 </div> <div class="publication-citation"> <a target="_blank" href="/api/publication?cond=citations.related;eq;32111160&sort=publishedYear,desc&sort=title"> Idézett közlemények száma: 11 </a> </div> <div class="mtid"><span class="long-pub-mtid">Közlemény: 32111160</span> | <span class="status-data status-APPROVED"> Nyilvános </span> Forrás Idéző | <span class="type-subtype">Folyóiratcikk ( Sokszerzős vagy csoportos szerzőségű szakcikk ) </span> | <span class="pub-category">Tudományos</span> | <span class="publication-sourceOfData">kézi felvitel</span> </div> <div class="funder"> (K-125509) Támogató: MTA </div> <div class="notDuplums"><a target="_blank" href="/api/publication/32111160/notduplums">1 Nem duplumnak jelölés</a> </div> <div class="lastModified">Utolsó módosítás: 2025.02.25. 23:42 Ladányi Gusztáv (MTMT API user, admin) </div> <div class="lockedBy">Központi kezelésű 2022.09.08. 08:43 Vándor Andrea (VA, admin) </div> <pre class="comment" style="margin-top: 0; margin-bottom: 0;"><u>Megjegyzés</u>: Funding Agency and Grant Number: Berta Kamprad Foundation; Mats and Stefan Paulsson Trust, Lund, Sweden; National Research Foundation of Korea (MSIP) [2015K1A1A2028365]; Thermo Fisher Scientific; European Cancer Moonshot Center in Lund; U.S. National Cancer Institute's International Cancer Proteogenome Consortium (ICPC); Federal University of Rio de Janeiro, Brazil [CAPES 88887.130697, CNPq 440...</pre> </div></div>