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Systems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), Campus de Cantoblanco, Madrid, 28049, Spain
Synthetic and Systems Biology Unit, Institute of Biochemistry, Hungary
Sequencing Platform, Biological Research Centre, Hungarian Academy of Sciences, Szeged, H-6726, Hungary
Sequencing Laboratory, SeqOmics Biotechnology Ltd., Mórahalom, 6782, Hungary
Cited By :5
Export Date: 8 December 2020
CODEN: ENMIF
Correspondence Address: Martínez-García, E.; Systems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), Campus de CantoblancoSpain; email: emartinez@cnb.csic.es
Systems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), Campus de Cantoblanco, Madrid, 28049, Spain
Synthetic and Systems Biology Unit, Institute of Biochemistry, Hungary
Sequencing Platform, Biological Research Centre, Hungarian Academy of Sciences, Szeged, H-6726, Hungary
Sequencing Laboratory, SeqOmics Biotechnology Ltd., Mórahalom, 6782, Hungary
Cited By :7
Export Date: 25 August 2021
CODEN: ENMIF
Correspondence Address: Martínez-García, E.; Systems and Synthetic Biology Program, Spain; email: emartinez@cnb.csic.es
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Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene
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The mismatch repair (MMR) system is one of the key molecular devices that prokaryotic cells have for ensuring fidelity of DNA replication. While the canonical MMR of E. coli involves 3 proteins (encoded by mutS, mutL and mutH), the soil bacterium Pseudomonads putida has only 2 bona fide homologues (mutS and mutL) and the sensitivity of this abridged system to different types of mismatches is unknown. In this background, sensitivity to MMR of this bacterium was inspected through single stranded (ss) DNA recombineering of the pyrF gene (the prokaryotic equivalent to yeast's URA3) with mutagenic oligos representative of every possible mispairing under either wild-type conditions, permanent deletion of mutS or transient loss of mutL activity (brought about by the thermoinducible dominant negative allele mutL(E36K)). Analysis of single nucleotide mutations borne by clones resistant to fluoroorotic acid (5FOA, the target of wild type PyrF) pinpointed prohibited and tolerated single-nucleotide replacements and exposed a clear grading of mismatch recognition. The resulting data unequivocally established the hierarchy A:G < C:C < G:A < C:A, A:A, G:G, T:T, T:G, A:C, C:T < G:T, T:C as the one prevalent in Pseudomonas putida. This information is vital for enabling recombineering strategies aimed at single-nucleotide changes in this biotechnologically important species.
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<div class="JournalArticle Publication short-list"> <div class="authors"> <span class="author-name" > Aparicio, Tomas </span> <span class="author-type"> </span> ; <span class="author-name" mtid="10043320"> <a href="/gui2/?type=authors&mode=browse&sel=10043320" target="_blank">Nyerges, Akos</a> </span> <span class="author-type"> </span> ; <span class="author-name" mtid="10026761"> <a href="/gui2/?type=authors&mode=browse&sel=10026761" target="_blank">Nagy, Istvan</a> </span> <span class="author-type"> </span> ; <span class="author-name" mtid="10027825"> <a href="/gui2/?type=authors&mode=browse&sel=10027825" target="_blank">Pal, Csaba</a> </span> <span class="author-type"> </span> ; <span class="author-name" > Martinez-Garcia, Esteban </span> <span class="author-type"> </span> ; <span class="author-name" > de, Lorenzo Victor </span> <span class="author-type"> </span> </div ><div class="title"><a href="/gui2/?mode=browse¶ms=publication;30927710" mtid="30927710" target="_blank">Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene</a></div> <div class="pub-info"> <span class="journal-title">ENVIRONMENTAL MICROBIOLOGY</span> <span class="journal-volume">22</span> : <span class="journal-issue">1</span> <span class="page"> pp. 45-58. , 14 p. </span> <span class="year">(2020)</span> </div> <div class="pub-end"><div class="identifier-list"> <span class="identifiers"> <span class="id identifier oa_PAY" title=" Pay "> <a style="color:blue" title="10.1111/1462-2920.14814" target="_blank" href="https://doi.org/10.1111/1462-2920.14814"> DOI </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="000494750300001" target="_blank" href="https://www.webofscience.com/wos/woscc/full-record/000494750300001"> WoS </a> </span> <span class="id identifier oa_GREEN" title=" Green "> <a style="color:black" title="103592" target="_blank" href="http://real.mtak.hu/103592"> REAL </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="85075186833" target="_blank" href="http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85075186833"> Scopus </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:blue" title="31599106" target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=31599106&dopt=Abstract"> PubMed </a> </span> <span class="id identifier oa_none" title="none"> <a style="color:black" title="https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14814" target="_blank" href="https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14814"> Other URL </a> </span> </span> </div> <div class="short-pub-prop-list"> <span class="deleted-record">Locked</span> <span class="short-pub-mtid"> Publication:30927710 </span> <span class="status-holder"><span class="status-data status-VALIDATED"> Validated </span></span> <span class="pub-core">Core Citing </span> <span class="pub-type">Journal Article (Article ) </span> <!-- && !record.category.scientific --> <span class="pub-category">Scientific</span> <div class="publication-citation" style="margin-left: 0.5cm;"> <span title="" class="citingPub-count">Citing papers: 17</span> | Independent citation: 12 | Self citation: 5 | Unknown citation: 0 | Number of citations in WoS: 15 | Number of citations in Scopus: 14 | WoS/Scopus assigned: 17 | Number of citations with DOI: 17 (Not published: 1) </div> </div> </div> </div><div class="JournalArticle Publication long-list">
<div class="authors">
<img title="Forrásközlemény" style="float: left" src="/frontend/resources/grid/publication-core-icon.png">
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<div class="autype autype0"> <span class="author-name" >Aparicio Tomas
</span>
;
<span class="author-name" mtid="10043320"><a
href="/gui2/?type=authors&mode=browse&sel=10043320" target="_blank">Nyerges Akos
(<span class="authorship-author-name">Nyerges Ákos</span>
<span class="authorAux-mtmt"> biokémia</span>)
</a>
</span>
<span class="author-affil"><span title="Biological Research Centre, Szeged">BRC Szeged</span>/Institute of Biochemistry</span>
;
<span class="author-name" mtid="10026761"><a
href="/gui2/?type=authors&mode=browse&sel=10026761" target="_blank">Nagy Istvan
(<span class="authorship-author-name">Nagy István</span>
<span class="authorAux-mtmt"> Genomika, immunológia</span>)
</a>
</span>
<span class="author-affil"><span title="Biological Research Centre, Szeged">BRC Szeged</span>/Institute of Biochemistry</span>
;
<span class="author-name" mtid="10027825"><a
href="/gui2/?type=authors&mode=browse&sel=10027825" target="_blank">Pal Csaba
(<span class="authorship-author-name">Pál Csaba</span>
<span class="authorAux-mtmt"> biokémia</span>)
</a>
</span>
<span class="author-affil"><span title="Biological Research Centre, Szeged">BRC Szeged</span>/Institute of Biochemistry</span>
;
<span class="author-name" >Martinez-Garcia Esteban
</span>
;
<span class="author-name" >de Lorenzo Victor
</span>
</div>
</div>
<div class="title"><a href="/gui2/?mode=browse¶ms=publication;30927710" target="_blank">Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene</a></div> <div> <span class="journal-title">ENVIRONMENTAL MICROBIOLOGY</span>
<span class="journal-issn">(<a target="_blank" href="https://portal.issn.org/resource/ISSN/1462-2912">1462-2912</a> <a target="_blank" href="https://portal.issn.org/resource/ISSN/1462-2920">1462-2920</a>)</span>:
<span class="journal-volume">22</span> <span class="journal-issue">1</span>
<span class="page">
pp 45-58
</span> <span class="year">(2020)</span>
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<div class="pub-footer">
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English
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<div class="publication-citation" style="margin-left: 0.5cm;">
<span title="" class="citingPub-count">Citing papers: 17</span>
| Independent citation: 12
| Self citation: 5
| Unknown citation: 0
| Number of citations in WoS: 15
| Number of citations in Scopus: 14
| WoS/Scopus assigned: 17
| Number of citations with DOI: 17
(Not published: 1)
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Number of cited publications: 3
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<div class="mtid"><span class="long-pub-mtid">Publication: 30927710</span>
| <span class="status-data status-VALIDATED"> Validated
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| <span class="type-subtype">Journal Article
( Article
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<div class="lastModified">Last Modified: 2021.10.16. 16:16 Katalin Bikádi (MTMT ellenőrzés admin5)
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<div class="lockedBy">Temporarily locked 2021.12.22. 07:55 Zsuzsa Aggod (MTMT 2-3, admin)
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<pre class="comment" style="margin-top: 0; margin-bottom: 0;"><u>Comments</u>: Systems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), Campus de Cantoblanco, Madrid, 28049, Spain
Synthetic and Systems Biology Unit, Institute of Biochemistry, Hungary
Sequencing Platform, Biological Research Centre, Hungarian Academy of Sciences, Szeged, H-6726, Hungary
Sequencing Laboratory,...</pre>
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