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true, "scopusIndexed" : true, "lang" : "FOREIGN", "hungarian" : false, "published" : true, "oldId" : 10001136, "snippet" : true }, "volume" : "6", "firstPage" : "170", "lastPage" : "181", "firstPageOrInternalIdForSort" : "170", "pageLength" : 12, "publishedYear" : 2005, "abstractText" : "Background: The interacting residues of protein and nucleic acid\nsequences are close to each other - they are co-located. Structure\ndatabases ( like Protein Data Bank, PDB and Nucleic Acid Data Bank,\nNDB) contain all information about these co-locations; however it is\nnot an easy task to penetrate this complex information. We developed a\nJAVA tool, called SeqX for this purpose.\nResults: SeqX tool is useful to detect, analyze and visualize residue\nco-locations in protein and nucleic acid structures. The user\na. selects a structure from PDB;\nb. chooses an atom that is commonly present in every residues of the\nnucleic acid and/or protein structure(s)\nc. defines a distance from these atoms ( 3 - 15 angstrom). The SeqX\ntool detects every residue that is located within the defined distances\nfrom the defined \"backbone\" atom( s); provides a DotPlot-like\nvisualization ( Residues Contact Map), and calculates the frequency of\nevery possible residue pairs ( Residue Contact Table) in the observed\nstructure. It is possible to exclude +/- 1 to 10 neighbor residues in\nthe same polymeric chain from detection, which greatly improves the\nspecificity of detections ( up to 60% when tested on dsDNA). Results\nobtained on protein structures showed highly significant correlations\nwith results obtained from literature ( p < 0.0001, n = 210, four\ndifferent subsets). The co-location frequency of physico-chemically\ncompatible amino acids is significantly higher than is calculated and\nexpected in random protein sequences ( p < 0.0001, n = 80).\nConclusion: The tool is simple and easy to use and provides a quick and\nreliable visualization and analyses of residue co-locations in protein\nand nucleic acid structures.\nAvailability and requirements: http:// janbiro. com/ Downloads. html\nSeqX, Java J2SE Runtime Environment 5.0 ( available from [ see\nAdditional file 1] http:// www. sun. com) and at least a 1 GHz\nprocessor and with a minimum 256 Mb RAM. 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DIEMAND AV, 2004, NUCLEIC ACIDS RES S2, V32, W512, DOI: 10.1093/nar/gkh403", "listPosition" : 6, "doi" : "10.1093/nar/gkh403", "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842301, "link" : "/api/reference/1842301", "label" : "7. EILERS M, 2002, BIOPHYS J, V82, P2720", "listPosition" : 7, "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842302, "link" : "/api/reference/1842302", "label" : "8. GABDOULLINE RR, 2003, NUCLEIC ACIDS RES, V31, P3349, DOI: 10.1093/nar/gkg588", "listPosition" : 8, "doi" : "10.1093/nar/gkg588", "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842303, "link" : "/api/reference/1842303", "label" : "9. GLASER F, 2001, PROTEINS, V43, P89", "listPosition" : 9, "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842304, "link" : "/api/reference/1842304", "label" : "10. HEINIG M, 2004, NUCLEIC ACIDS RES S2, V32, W500, DOI: 10.1093/nar/gkh429", "listPosition" : 10, "doi" : "10.1093/nar/gkh429", "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842305, "link" : "/api/reference/1842305", "label" : "11. KUMAREVEL TS, 2001, PREP BIOCHEM BIOTECH, V31, P163", "listPosition" : 11, "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842306, "link" : "/api/reference/1842306", "label" : "12. MANDELGUTFREUND Y, 1995, J MOL BIOL, V253, P370", "listPosition" : 12, "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842307, "link" : "/api/reference/1842307", "label" : "13. NAIR D, 1996, J MOL BIOL, V256, P924", "listPosition" : 13, "published" : false, "snippet" : true }, { "otype" : "Reference", "mtid" : 1842308, "link" : "/api/reference/1842308", "label" : "14. 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